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Series GSE117976 Query DataSets for GSE117976
Status Public on Apr 30, 2020
Title Optic atrophy 1 controls human neuronal development by preventing aberrant nuclear DNA methylation
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Gene expression analysis was performed to investigate the role of OPA1 in human neuronal development.
Overall design High throughput sequencing of RNA samples isolated from human embryonic stem cell derived neural progenitor cells and neurons. Sequencing was performed 150 bp paired-end in an HiSeq 3000 instrument
Contributor(s) Hashim A, Staerk J, Caglayan S
Citation(s) 32450518
Submission date Aug 01, 2018
Last update date Jun 22, 2020
Contact name Judith Staerk
Organization name UiO (University of Oslo)
Department NCMM (Centre for Molecular Medicine Norway)
Street address NCMM - Forskningsparken, House 1, 3rd Floor - Gaustadalléen 21
City Oslo
State/province Oslo
ZIP/Postal code 0349
Country Norway
Platforms (2)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
GPL21290 Illumina HiSeq 3000 (Homo sapiens)
Samples (25)
GSM3316483 10-Con-neuron7w_S40_Rep1
GSM3316484 11-OPA1hetneuron7w_S41_Rep1
GSM3316485 6-ConNSCd11-1_S38_Rep1
BioProject PRJNA483882
SRA SRP155953

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Supplementary file Size Download File type/resource
GSE117976_OPA1-KO-NPC-3weeks_VS_control-NPC-3weeks_exon_counts.txt.gz 2.4 Mb (ftp)(http) TXT
GSE117976_OPA1-KO-NPC-D11_VS_control-NPC-D11_exon_counts.txt.gz 2.4 Mb (ftp)(http) TXT
GSE117976_OPA1hetneuron7weeks_VS_control-neuron7weeks_exon_counts_modified_triplicate.txt.gz 2.3 Mb (ftp)(http) TXT
GSE117976_hESC_WT_D0_pairend_exon_counts_modified_triplicate.txt.gz 2.2 Mb (ftp)(http) TXT
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Processed data are available on Series record

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