|
| Status |
Public on Oct 02, 2019 |
| Title |
Integrated Paired-end Enhancer Profiling and Whole-Genome Sequencing Reveals Recurrent CCNE1 and IGF2 Enhancer Hijacking in Primary Gastric Adenocarcinoma (ChIP-seq) |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
H3K27ac paired-end NanoChIP-seq, whole-genome sequecing, RNA-seq and Hi-C were integrated to reveal tumor-associated structural variants contributing to gastric cancer
|
| |
|
| Overall design |
H3K27ac paired-end NanoChIP-seq were generated from primary GC and matched normal samples to discover regulatory structural variations that occurred at cis-regulatory elements marking by H3K27ac mark.
|
| |
|
| Contributor(s) |
Fong OW, Lim K, Tan P |
| Citation(s) |
31542774 |
| Submission date |
Jul 31, 2018 |
| Last update date |
Oct 02, 2019 |
| Contact name |
Wen Fong Ooi |
| E-mail(s) |
gis.ooiwf@gmail.com
|
| Organization name |
Genome Institute of Singapore
|
| Street address |
60 Biopolis
|
| City |
Singapore |
| ZIP/Postal code |
470110 |
| Country |
Singapore |
| |
|
| Platforms (2) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
| GPL21290 |
Illumina HiSeq 3000 (Homo sapiens) |
|
| Samples (44)
|
|
| This SubSeries is part of SuperSeries: |
| GSE118392 |
Integrated Paired-end Enhancer Profiling and Whole-Genome Sequencing Reveals Recurrent CCNE1 and IGF2 Enhancer Hijacking in Primary Gastric Adenocarcinoma |
|
| Relations |
| BioProject |
PRJNA483783 |
| SRA |
SRP155884 |
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