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Series GSE117345 Query DataSets for GSE117345
Status Public on Oct 06, 2020
Title Inhibition of CXCR1/2 in human colitis-derived pluripotent stem cell intestinal organoids attenuates the inflammatory phenotype
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary We report the results of RNA-Seq on iPSCs, Definitive Endoderm (DE), Spheroids (Sph), and induced human intestinal organoids (iHIOs) from colitic and normal primary patient colon tissues
 
Overall design Transcriptome analysis of iPSCs, DE, Spheroids and iHIOs isolated from colitic and normal primary tissues.
 
Contributor(s) Huang E
Citation(s) 33431859
NIH grant(s)
Grant ID Grant title Affiliation Name
U01 CA214300 An organotypic model recapitulating colon cancer microenvironment and metastasis CLEVELAND CLINIC LERNER COLLEGE OF MEDICINE - CWRU Emina HUI-NA Huang
R01 CA237304 The miR-20/c-Myc/E2F Regulatory Axis is Critical for the Tumor Promoting Activity of Inflammatory Fibroblasts in Colitis-Associated Cancer CLEVELAND CLINIC LERNER COLLEGE OF MEDICINE - CWRU Emina HUI-NA Huang
Submission date Jul 18, 2018
Last update date Jan 12, 2021
Contact name Emina Huang
E-mail(s) huange2@ccf.org
Phone 2163863265
Organization name Lerner Research Institute/Cleveland Clinic
Department Stem Cell
Lab Huang Lab
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (24)
GSM3291506 1541-iPSCs_S1
GSM3291507 NL33-iPSCs_S3
GSM3291508 NL34-iPSCs_S2
Relations
BioProject PRJNA481790
SRA SRP154390

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE117345_expression.raw_counts.txt.gz 1.1 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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