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Series GSE116987 Query DataSets for GSE116987
Status Public on Feb 22, 2019
Title Transcriptional regulation of Hepatic Stellate Cell plasticity in NASH
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We here perform transcriptional profiling of hepatic stellate cells (HSCs) isolated from Western diet/high fructose-fed C57BL6/J mice, carbon tretrachloride (CCl4)-treated C57BL6/J mice, and of murine HSCs differentiated in vitro.
 
Overall design Gene expression profiles from hepatic stellate cells isolated from C57BL6 mice fed a Western Diet supplemented with high fructose for 12, 16 or 24 weeks or normal chow. Gene expression profiles from hepatic stellate cells isolated from C57BL6 mice treated CCl4 for 1, 4 or 8 weeks or treated with vehicle. Gene expression profiles from hepatic stellate cells isolated from C57BL6 mice and seeded on normal plastic cell culture dishes for 1, 4, 8, or 12 days.
 
Contributor(s) Marcher A, Ravnskjaer K
Citation(s) 30787418
Submission date Jul 12, 2018
Last update date Feb 23, 2019
Contact name Kim Ravnskjaer
Organization name University of Southern Denmark
Department Department of Biochemistry and Molecular Biology
Street address Campusvej 55
City Odense M
State/province CA
ZIP/Postal code 5230
Country Denmark
 
Platforms (1)
GPL18480 Illumina HiSeq 1500 (Mus musculus)
Samples (45)
GSM3266856 CCl4 0weeks, A
GSM3266857 CCl4 0weeks, B
GSM3266858 CCl4 0weeks, C
Relations
BioProject PRJNA480796
SRA SRP153157

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE116987_ccl4_ms_data_exon_count_matrix_mm10_noadjust.txt.gz 433.8 Kb (ftp)(http) TXT
GSE116987_ivt_ms_data_exon_count_matrix_mm10_noadjust.txt.gz 462.8 Kb (ftp)(http) TXT
GSE116987_wd_ms_data_exon_count_matrix_mm10_noadjust.txt.gz 484.1 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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