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Series GSE11657 Query DataSets for GSE11657
Status Public on Dec 07, 2010
Title The association between gene expression and whole genome histone H3K4 mono-, di, and trimethylation: ChIP-seq data
Organism Arabidopsis thaliana
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary These ChIP-seq data files are part of a study where a comparison was made between the change in transcription and H3K4 mono-, di-, and tri-methylation levels in the Arabidopsis thaliana genome when plants are subjected to water deficit stress.

Keywords: stress response, histone modification
Overall design Arabidopsis thaliana DNA histone modifications were immonuprecipitated from control (watered) and treatment (water-deficit) samples for Illumina 1G Solexa sequencing.
Contributor(s) van Dijk K, Riethoven JM, Yang J, Laczko P, Chen H, Xia Y, Ladunga I, Fromm ME
Citation(s) 21050490
Submission date Jun 03, 2008
Last update date Aug 10, 2016
Contact name Jean-Jack M. Riethoven
Organization name University of Nebraska-Lincoln
Department Beadle Center for Biotechnology
Lab Bioinformatics Core Research Facility
Street address 1901 Vine Street
City Lincoln
State/province NE
ZIP/Postal code 68588-0665
Country USA
Platforms (1)
GPL9062 Illumina Genome Analyzer (Arabidopsis thaliana)
Samples (6)
GSM296187 rosettes_watered_h3k4me1
GSM296188 rosettes_watered_h3k4me2
GSM296189 rosettes_watered_h3k4me3
This SubSeries is part of SuperSeries:
GSE11658 The association between gene expression and whole genome histone H3K4 mono-, di, and trimethylation
BioProject PRJNA109153

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE11657_RAW.tar 21.0 Gb (http)(custom) TAR (of TAR, XLS)
Raw data provided as supplementary file
Processed data provided as supplementary file

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