GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE116159 Query DataSets for GSE116159
Status Public on Aug 01, 2018
Title RNA-seq profiling of patient-derived xenograft models in Urothelial Cancer
Organisms Homo sapiens; Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary To probe the tissue source (cancer cell VS stromal cell) of gene expression in the mixed tumor samples, we took advantage of a set of Urothelial Cancer patient-derived xenograft (PDX) models given that the transcriptome in these models is a mixture of human RNA (derived from cancer cells) and mouse RNA (derived from stromal cells).
Overall design The cohort includes 5 different patient-derived PDX models, 3 replicates for each model, and thus a total of 15 samples
Contributor(s) Domingo-Domenech J, Wang L
Citation(s) 30158554
Submission date Jun 22, 2018
Last update date Nov 01, 2018
Contact name Li Wang
Organization name Icahn school of medicine at Mount Sinai
Street address 1 Gustave L. Levy Pl
City New York
ZIP/Postal code 10029
Country USA
Platforms (1)
GPL22245 Illumina HiSeq 2500 (Homo sapiens; Mus musculus)
Samples (15)
GSM3211539 163C1
GSM3211540 163C2
GSM3211541 163C3
BioProject PRJNA477510
SRA SRP151120

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE116159_humanBetter_count.txt.gz 2.3 Mb (ftp)(http) TXT
GSE116159_humanOnly_count.txt.gz 2.7 Mb (ftp)(http) TXT
GSE116159_mouseBetter_count.txt.gz 2.1 Mb (ftp)(http) TXT
GSE116159_mouseOnly_count.txt.gz 2.3 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap