GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE115230 Query DataSets for GSE115230
Status Public on May 21, 2024
Title Genome wide analysis of the upper lumbar spinal cord at 4 days after T9 hemisection injury
Organism Rattus norvegicus
Experiment type Expression profiling by high throughput sequencing
Summary The goal of this study is to elucidate the influence of hemisection injury at thoracic spinal cord (T9) on the upper transcriptome of the upper lumbar spinal cord at acute phase. mRNA profiles of spinal cord at 4 days-post injury and before injury were generated. 72 Differentially Expressed Genes (DEGs) were observed. Our study represents the detailed analysis of transcriptomes of spinal cord distal to the hemisected lesion at acute phase, with biologic replicates, generated by RNA-seq technology.
Overall design The effect of spinal cord injury on the transcriptome of intact upper spinal cord was investigated.
Contributor(s) Kobayakawa K, Edgerton R, Harada A, Nogami J, Ohkawa Y
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Jun 01, 2018
Last update date May 21, 2024
Contact name Yasuyuki Ohkawa
Organization name Medical Institute of Bioregulation
Lab Division of Transcriptomics
Street address 3-1-1 Maidashi
City Fukuoka
ZIP/Postal code 8128582
Country Japan
Platforms (1)
GPL18404 Illumina HiSeq 1500 (Rattus norvegicus)
Samples (8)
GSM3168333 L1C1: Spinal cord
GSM3168334 L1C2: Spinal cord
GSM3168335 L1C3: Spinal cord
BioProject PRJNA474210
SRA SRP149800

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE115230_umi_counts.txt.gz 170.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap