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Series GSE115229 Query DataSets for GSE115229
Status Public on May 21, 2024
Title Genome wide analysis of lower spinal cords with training after spinal cord hemisection injury
Organism Rattus norvegicus
Experiment type Expression profiling by high throughput sequencing
Summary The goal of this study is to elucidate the influence of treadmill training on transcriptome of the lower lumbar spinal cord after thoracic spinal cord hemisection. mRNA profiles of spinal cords at 23 days-post injury with/without treadmill training were generated. The expression levels of 650 genes in the trained animal were increased ( > 2-fold) compared to untrained animals. Our study represents the detailed analysis of transcriptomes of spinal cord distal to the hemisected lesion after treadmill training, with biologic replicates, generated by RNA-seq technology.
Overall design The effect of training after spinal cord injury (T9) on the transcriptome of intact lower spinal cord was investigated.
Contributor(s) Kobayakawa K, Edgerton R, Harada A, Nogami J, Ohkawa Y
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Submission date Jun 01, 2018
Last update date May 21, 2024
Contact name Yasuyuki Ohkawa
Organization name Medical Institute of Bioregulation
Lab Division of Transcriptomics
Street address 3-1-1 Maidashi
City Fukuoka
ZIP/Postal code 8128582
Country Japan
Platforms (1)
GPL18404 Illumina HiSeq 1500 (Rattus norvegicus)
Samples (8)
GSM3168325 L2N1: Spinal cord
GSM3168326 L2N2: Spinal cord
GSM3168327 L2N3: Spinal cord
BioProject PRJNA474208
SRA SRP149799

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE115229_umi_counts.txt.gz 185.8 Kb (ftp)(http) TXT
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