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Series GSE115047 Query DataSets for GSE115047
Status Public on Oct 09, 2018
Title A chromatin integration labeling method enables lower-input epigenomic profiling
Organisms Homo sapiens; Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We established a novel epigenomic profiling method ChIL-seq which does not employ immunoprecipitation, but instead exploits immunostaining.
Overall design We performed ChIL-seq on C2C12, NIH3T3, K562, MCF-7 and MDA-MB-231 cells with various cell numbers (1, 100, 1k, 10k and 100k cells) against various histone modifications and transcription factors, as well as H3K4me3 ChIP-seq for C2C12, MCF-7 and MDA-MB-231.
Contributor(s) Ohkawa Y, Nogami J, Maehara K, Harada A
Citation(s) 30532068
Submission date May 29, 2018
Last update date Mar 16, 2020
Contact name Yasuyuki Ohkawa
Organization name Medical Institute of Bioregulation
Lab Division of Transcriptomics
Street address 3-1-1 Maidashi
City Fukuoka
ZIP/Postal code 8128582
Country Japan
Platforms (4)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
GPL18460 Illumina HiSeq 1500 (Homo sapiens)
Samples (189)
GSM3163909 C2C12 H3K4me3 at 100k cells replicate 1
GSM3163910 C2C12 H3K4me3 at 100k cells replicate 2
GSM3163911 C2C12 H3K4me3 at 10k cells replicate 1
BioProject PRJNA473561
SRA SRP149207

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Supplementary file Size Download File type/resource
GSE115047_RAW.tar 2.7 Gb (http)(custom) TAR (of BED, BW, NARROWPEAK)
GSE115047_countMatrix10k_C2C12_cellnumbers.csv.gz 17.5 Mb (ftp)(http) CSV
GSE115047_countMatrix10k_C2C12_conditions.csv.gz 10.3 Mb (ftp)(http) CSV
GSE115047_countMatrix4k_C2C12_cellnumbers.csv.gz 35.6 Mb (ftp)(http) CSV
GSE115047_countMatrix4k_C2C12_conditions.csv.gz 19.4 Mb (ftp)(http) CSV
GSE115047_countMatrix4k_K562_H3K4me3.csv.gz 5.4 Mb (ftp)(http) CSV
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Raw data are available in SRA
Processed data provided as supplementary file

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