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GEO accession:
Series GSE115046
Query DataSets for GSE115046
Status
Public on Oct 23, 2019
Title
Massively parallel characterization of regulatory dynamics during neural induction
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
31631012
,
38296821
,
39337329
Submission date
May 29, 2018
Last update date
Oct 10, 2024
Contact name
Anat Kreimer
E-mail(s)
anat.kreimer@berkeley.edu
Organization name
University of California, Berkeley
Street address
378 Stanley Hall
City
Berkeley
State/province
CA
ZIP/Postal code
94720
Country
USA
Platforms (4)
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GPL16791
Illumina HiSeq 2500 (Homo sapiens)
GPL18573
Illumina NextSeq 500 (Homo sapiens)
GPL20301
Illumina HiSeq 4000 (Homo sapiens)
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
Samples (110)
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GSM3163823
MPRA_rep1
GSM3163824
MPRA_rep2
GSM3163825
MPRA_rep3
GSM3163826
H3K27ac_ChIPSeq_rep1_0hr
GSM3163827
H3K27ac_ChIPSeq_rep1_3hr
GSM3163828
H3K27ac_ChIPSeq_rep1_6hr
GSM3163829
H3K27ac_ChIPSeq_rep1_12hr
GSM3163830
H3K27ac_ChIPSeq_rep1_24hr
GSM3163831
H3K27ac_ChIPSeq_rep1_48hr
GSM3163832
H3K27ac_ChIPSeq_rep1_72hr
GSM3163833
H3K27me3_ChIPSeq_rep1_0hr
GSM3163834
H3K27me3_ChIPSeq_rep1_3hr
GSM3163835
H3K27me3_ChIPSeq_rep1_6hr
GSM3163836
H3K27me3_ChIPSeq_rep1_12hr
GSM3163837
H3K27me3_ChIPSeq_rep1_24hr
GSM3163838
H3K27me3_ChIPSeq_rep1_48hr
GSM3163839
H3K27me3_ChIPSeq_rep1_72hr
GSM3163840
input_DNA_rep1_0hr_Input
GSM3163841
input_DNA_rep1_3hr_Input
GSM3163842
input_DNA_rep1_6hr_Input
GSM3163843
input_DNA_rep1_12hr_Input
GSM3163844
input_DNA_rep1_24hr_Input
GSM3163845
input_DNA_rep1_48hr_Input
GSM3163846
input_DNA_rep1_72hr_Input
GSM3163847
H3K27ac_ChIPSeq_rep2_0hr
GSM3163848
H3K27ac_ChIPSeq_rep2_3hr
GSM3163849
H3K27ac_ChIPSeq_rep2_6hr
GSM3163850
H3K27ac_ChIPSeq_rep2_12hr
GSM3163851
H3K27ac_ChIPSeq_rep2_24hr
GSM3163852
H3K27ac_ChIPSeq_rep2_48hr
GSM3163853
H3K27ac_ChIPSeq_rep2_72hr
GSM3163854
H3K27me3_ChIPSeq_rep2_0hr
GSM3163855
H3K27me3_ChIPSeq_rep2_3hr
GSM3163856
H3K27me3_ChIPSeq_rep2_6hr
GSM3163857
H3K27me3_ChIPSeq_rep2_12hr
GSM3163858
H3K27me3_ChIPSeq_rep2_24hr
GSM3163859
H3K27me3_ChIPSeq_rep2_48hr
GSM3163860
H3K27me3_ChIPSeq_rep2_72hr
GSM3163861
input_DNA_rrep2_0hr_Input
GSM3163862
input_DNA_rrep2_3hr_Input
GSM3163863
input_DNA_rrep2_6hr_Input
GSM3163864
input_DNA_rrep2_12hr_Input
GSM3163865
input_DNA_rrep2_24hr_Input
GSM3163866
input_DNA_rrep2_48hr_Input
GSM3163867
input_DNA_rrep2_72hr_Input
GSM3163868
ATACseq_3TP_0hr_rep1
GSM3163869
ATACseq_3TP_3hr_rep1
GSM3163870
ATACseq_3TP_72hr_rep1
GSM3163871
ATACseq_3TP_0hr_rep2
GSM3163872
ATACseq_3TP_3hr_rep2
GSM3163873
ATACseq_3TP_72hr_rep2
GSM3163874
ATACseq_7TP_0hr_rep1
GSM3163875
ATACseq_7TP_3hr_rep1
GSM3163876
ATACseq_7TP_6hr_rep1
GSM3163877
ATACseq_7TP_12hr_rep1
GSM3163878
ATACseq_7TP_24hr_rep1
GSM3163879
ATACseq_7TP_48hr_rep1
GSM3163880
ATACseq_7TP_72hr_rep1
GSM3163881
ATACseq_7TP_0hr_rep2
GSM3163882
ATACseq_7TP_3hr_rep2
GSM3163883
ATACseq_7TP_6hr_rep2
GSM3163884
ATACseq_7TP_12hr_rep2
GSM3163885
ATACseq_7TP_24hr_rep2
GSM3163886
ATACseq_7TP_48hr_rep2
GSM3163887
ATACseq_7TP_72hr_rep2
GSM3163888
RNAseq_0hr_rep1
GSM3163889
RNAseq_3hr_rep1
GSM3163890
RNAseq_6hr_rep1
GSM3163891
RNAseq_12hr_rep1
GSM3163892
RNAseq_24hr_rep1
GSM3163893
RNAseq_48hr_rep1
GSM3163894
RNAseq_72hr_rep1
GSM3163895
RNAseq_0hr_rep2
GSM3163896
RNAseq_3hr_rep2
GSM3163897
RNAseq_6hr_rep2
GSM3163898
RNAseq_12hr_rep2
GSM3163899
RNAseq_24hr_rep2
GSM3163900
RNAseq_48hr_rep2
GSM3163901
RNAseq_72hr_rep2
GSM3163902
RNAseq_0hr_rep3
GSM3163903
RNAseq_3hr_rep3
GSM3163904
RNAseq_6hr_rep3
GSM3163905
RNAseq_12hr_rep3
GSM3163906
RNAseq_24hr_rep3
GSM3163907
RNAseq_48hr_rep3
GSM3163908
RNAseq_72hr_rep3
GSM3963272
RNAseq_BARHL1 rep 1
GSM3963273
RNAseq_BARHL1 rep 2
GSM3963274
RNAseq_BARHL1 rep 3
GSM3963275
RNAseq_IRX3 rep 1
GSM3963276
RNAseq_IRX3 rep 2
GSM3963277
RNAseq_IRX3 rep 3
GSM3963278
RNAseq_LHX5 rep 1
GSM3963279
RNAseq_LHX5 rep 2
GSM3963280
RNAseq_LHX5 rep 3
GSM3963281
RNAseq_OTX1 rep 1
GSM3963282
RNAseq_OTX1 rep 2
GSM3963283
RNAseq_OTX1 rep 3
GSM3963284
RNAseq_OTX2 rep 1
GSM3963285
RNAseq_OTX2 rep 2
GSM3963286
RNAseq_OTX2 rep 3
GSM3963287
RNAseq_PAX6 rep 1
GSM3963288
RNAseq_PAX6 rep 2
GSM3963289
RNAseq_PAX6 rep 3
GSM3963290
RNAseq_EGFP rep 1
GSM3963291
RNAseq_EGFP rep 2
GSM3963292
RNAseq_EGFP rep 3
GSM3963293
RNAseq_dSi rep 1
GSM3963294
RNAseq_dSi rep 2
GSM3963295
RNAseq_dSi rep 3
This SuperSeries is composed of the following SubSeries:
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More...
GSE115042
Massively parallel characterization of regulatory dynamics during neural induction [MPRA]
GSE115043
Massively parallel characterization of regulatory dynamics during neural induction [ChIP-seq]
GSE115044
Massively parallel characterization of regulatory dynamics during neural induction [ATAC-seq]
GSE115045
Massively parallel characterization of regulatory dynamics during neural induction [RNA-seq]
GSE134678
Massively parallel characterization of regulatory dynamics during neural induction [RNA-seq II]
Relations
BioProject
PRJNA473806
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE115046_RAW.tar
41.3 Mb
(http)
(custom)
TAR (of BROADPEAK, NARROWPEAK)
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