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Series GSE114647 Query DataSets for GSE114647
Status Public on Apr 30, 2019
Title Targeting FGFR overcomes EMT-mediated resistance in EGFR mutant non-small cell lung cancer
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Acquired drug resistance to tyrosine kinase inhibitor (TKI) targeted therapies remains a major clinical challenge. In EGFR mutant non-small cell lung cancer (NSCLC), therapeutic failure of EGFR TKIs can result from both genetic and epigenetic mechanisms of acquired drug resistance. Histologic and gene expression changes consistent with an epithelial-to-mesenchymal transition (EMT) have been associated with resistance to EGFR TKIs in both experimental models and in patients, and may coincide with genetic mechanisms of resistance such as the EGFRT790M gatekeeper mutation. While therapeutic approaches targeting EGFRT790M have been developed, a strategy for overcoming EMT-related resistance remains unclear. We performed whole-genome CRISPR screening on patient-derived, mesenchymal EGFRT790M-positive cell lines and identified FGFR1 as a critical gene promoting resistance to third generation EGFR TKIs. The FGFR1-3 inhibitor, BGJ398 (infigratinib), resensitized resistant mesenchymal-like cell lines to EGFR inhibition in a synergistic manner. Combining EGFR + FGFR inhibitors also inhibited the in vitro survival and expansion of EGFR mutant drug tolerant cells with mesenchymal-like features prior to the development of drug resistance, and delayed the development of in vivo resistance in EGFR mutant NSCLC xenograft tumors. These results suggest that dual EGFR + FGFR blockade may be a promising clinical strategy for preventing and overcoming EMT-associated acquired drug resistance in EGFR mutant NSCLC.
 
Overall design PC9, HCC4006, HC1975, HCC827, MGH119 treated for two weeks with vehicle or with 300nM Gefitinib (300nM WZ4002 for H1975). Triplicates (duplicate for PC9 and MGH119)
 
Contributor(s) Raoof S, Hata AN, Frisco-Cabanos H, Ji F, Drier Y
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Submission date May 18, 2018
Last update date Apr 30, 2019
Contact name Sana Raoof
E-mail(s) sanaraoofmgh@gmail.com
Organization name Massachusetts General Hospital
Street address 175 Cambridge St
City Boston
ZIP/Postal code 02114
Country USA
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (30)
GSM3146387 HCC827_par_a
GSM3146388 HCC827_par_b
GSM3146389 HCC827_par_c
Relations
BioProject PRJNA472050
SRA SRP148443

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE114647_PC9_MGH119_genecounts.txt.gz 927.4 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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