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Series GSE114046 Query DataSets for GSE114046
Status Public on Nov 01, 2021
Title Tiled Capture-C
Organism Mus musculus
Experiment type Other
Summary Capture-C interaction profiles from the viewpoints of the promoters of Chac2, Cpeb4 and Fbxw11 in mouse erythroid and ES cells.
Overall design Capture-C combines 3C library preparation with oligonucleotide capture for the desired viewpoint restriction fragments. Experiments were performed in biological triplicates of primary erythroid and ES cells.
Contributor(s) Oudelaar AM, Telenius JM, Higgs DR, Hughes JR
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Submission date May 04, 2018
Last update date Nov 01, 2021
Contact name A Marieke Oudelaar
Organization name University of Oxford
Department MRC Weatherall Institute of Molecular Medicine
Street address John Radcliffe Hospital
City Oxford
ZIP/Postal code OX3 9DS
Country United Kingdom
Platforms (1)
GPL16417 Illumina MiSeq (Mus musculus)
Samples (6)
GSM2878058 Mouse erythroid cells biological replicate 1; Capture-C, interacting promoters viewpoints
GSM2878059 Mouse erythroid cells biological replicate 2; Capture-C, interacting promoters viewpoints
GSM2878060 Mouse erythroid cells biological replicate 3; Capture-C, interacting promoters viewpoints
BioProject PRJNA472055

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE114046_All_gfc_files.tar.gz 2.9 Mb (ftp)(http) TAR
GSE114046_README_Samples_and_processedfiles.txt 798 b (ftp)(http) TXT
Raw data are available in SRA
Processed data are available on Series record

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