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Series GSE113953 Query DataSets for GSE113953
Status Public on May 01, 2019
Title Co-transcriptional loading of RNA export factors shapes the human transcriptome
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary This SuperSeries is composed of the SubSeries listed below.
Overall design Refer to individual Series
Citation(s) 31104896
Submission date May 02, 2018
Last update date Aug 01, 2019
Contact name Ian Sudbery
Organization name University of Sheffield
Department Molecular Biology and Biotechnology
Lab Sudbery Lab for Computational Genomics
Street address Firth Court, Western Bank
City Sheffield
ZIP/Postal code S11 8HG
Country United Kingdom
Platforms (4)
GPL15520 Illumina MiSeq (Homo sapiens)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
GPL20795 HiSeq X Ten (Homo sapiens)
Samples (48)
GSM3123085 Alyref-FLAG-R1_hiseq7
GSM3123086 Alyref-FLAG-R1_hiseq8
GSM3123087 Alyref-FLAG-R1_miseq
This SuperSeries is composed of the following SubSeries:
GSE113896 iCLIP of components of the TREX complex
GSE113952 RNAseq of HEK293 cells after Chtop knockdown
GSE130992 ChIP-seq of TREX complex proteins in HEK293T cells
BioProject PRJNA454664

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE113953_RAW.tar 3.8 Gb (http)(custom) TAR (of BW, TXT)
SRA Run SelectorHelp

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