|
| Status |
Public on Feb 05, 2019 |
| Title |
Widespread transposable element-driven oncogene expression in cancers |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
|
| Summary |
Transposable elements act as promiscuous cryptic promoters that upregulate oncogenes (“onco-exaptation”) in many cancers.
|
| |
|
| Overall design |
OmniATAC-seq were generated for H1299 lung cancer cell line. RNA-seq, WGBS-seq and omniATAC-seq were generated for H838 lung cancer cell line. nanoCAGE-seq was generated for H727 lung cancer cell line.
|
| |
|
| Contributor(s) |
Jang HS, Wang T |
| Citation(s) |
30926969 |
| |
| Submission date |
May 02, 2018 |
| Last update date |
Apr 19, 2019 |
| Contact name |
Daofeng Li |
| E-mail(s) |
lidaof@gmail.com
|
| Phone |
(314) 286-0866
|
| Organization name |
Washington University in St. Louis
|
| Department |
Genetics
|
| Lab |
Ting Wang Lab
|
| Street address |
4515 McKinley Avenue
|
| City |
SAINT LOUIS |
| State/province |
MO |
| ZIP/Postal code |
63110 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
|
| Samples (6)
|
|
| Relations |
| BioProject |
PRJNA454575 |
| SRA |
SRP144312 |
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