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Series GSE112311 Query DataSets for GSE112311
Status Public on May 16, 2018
Title Genome-wide maps of histone modifications (SpikeIn) and Suz12 in WT, Dnmt3a-/-, Tet1-/- J1 and DKO ES cells.
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Using ChIP-seq to assess changes of histone modifications in response to Dnmt3a or Tet1 deficiency.
 
Overall design Examination of H3K4me3, H3K27me3 and Suz12 in WT, Dnmt3a-/-, Tet1-/- and DKO ES cells.
 
Contributor(s) Cullen SM, Lin X, Gu T, Li W, Goodell MA
Citation(s) 30001199
Submission date Mar 25, 2018
Last update date Mar 25, 2019
Contact name xueqiu lin
E-mail(s) xueqiu@fredhutch.org
Organization name Stanford University
Street address 450 Serra Mall
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (12)
GSM3067530 WT H3K4me3_SpikeIn_ChIPSeq
GSM3067531 WT H3K27me3_SpikeIn_ChIPSeq
GSM3067532 3aKO H3K4me3_SpikeIn_ChIPSeq
This SubSeries is part of SuperSeries:
GSE100957 The role of DNMT3A and TET1 in regulating promoter epigenetic landscapes
Relations
BioProject PRJNA445609
SRA SRP136418

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE112311_RAW.tar 1.8 Gb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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