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Series GSE111901 Query DataSets for GSE111901
Status Public on Mar 15, 2018
Title Single cell transcriptomic analysis of human CD25+ CD127- CD4+ Treg cells and CD25- CD127+ CD4+ Tconv cells isolated from peripheral blood
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Single cell transcriptomic analysis of human CD25+ CD127- CD4+ Treg cells and CD25- CD127+ CD4+ Tconv cells isolated from peripheral blood from two different donors
 
Overall design Single cells were sorted by flow cytometry for single cell RNAseq library preparation (InDrops)
 
Contributor(s) Zemmour D, Benoist C
Citation(s) 29434354
Submission date Mar 15, 2018
Last update date Mar 26, 2019
Contact name CBDM Lab
E-mail(s) cbdm@hms.harvard.edu
Phone 617-432-7747
Organization name Harvard Medical School
Department Microbiology and Immunobiology
Lab CBDM
Street address 77 Avenue Louis Pasteur
City Boston
State/province MA
ZIP/Postal code 02215
Country USA
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (4)
GSM3044560 HuTregFroz
GSM3044561 HuTconvFroz
GSM3044562 HuTregFresh
This SubSeries is part of SuperSeries:
GSE109742 Single cell transcriptomic analysis of mouse FoxP3- CD4+ Tconv cells and FoxP3+ regulatory CD4+ T cells isolated from secondary lymphoid organs, colon, muscle, visceral adipose tissue
Relations
BioProject PRJNA438503

Listing of Individual Cells header descriptions
name
title
source
library name
cell type
sample type
sex
age (months)
illumina_sequencer
total number of reads
number of mapped reads
number of unique reads (UMI)

Data table
name title source library name cell type sample type sex age (months) illumina_sequencer total number of reads number of mapped reads number of unique reads (UMI)
S1_105_124 HuTregFroz_rep1_5 PBMC S1 Treg HuTregFroz female NA NextSeq500 98712 68204 3952
S1_105_292 HuTregFroz_rep1_7 PBMC S1 Treg HuTregFroz female NA NextSeq500 33419 21605 1165
S1_109_205 HuTregFroz_rep1_9 PBMC S1 Treg HuTregFroz female NA NextSeq500 45124 29487 1481
S1_109_63 HuTregFroz_rep1_11 PBMC S1 Treg HuTregFroz female NA NextSeq500 37817 25627 1477
S1_109_69 HuTregFroz_rep1_12 PBMC S1 Treg HuTregFroz female NA NextSeq500 41419 28037 1479
S1_117_256 HuTregFroz_rep1_16 PBMC S1 Treg HuTregFroz female NA NextSeq500 42702 26644 1379
S1_117_264 HuTregFroz_rep1_17 PBMC S1 Treg HuTregFroz female NA NextSeq500 35763 23152 1272
S1_117_275 HuTregFroz_rep1_18 PBMC S1 Treg HuTregFroz female NA NextSeq500 42369 28233 1441
S1_117_383 HuTregFroz_rep1_19 PBMC S1 Treg HuTregFroz female NA NextSeq500 26885 19152 986
S1_117_44 HuTregFroz_rep1_20 PBMC S1 Treg HuTregFroz female NA NextSeq500 92313 65109 3704
S1_117_51 HuTregFroz_rep1_21 PBMC S1 Treg HuTregFroz female NA NextSeq500 42946 9982 737
S1_121_254 HuTregFroz_rep1_22 PBMC S1 Treg HuTregFroz female NA NextSeq500 35564 25846 1426
S1_121_370 HuTregFroz_rep1_24 PBMC S1 Treg HuTregFroz female NA NextSeq500 33917 25190 1315
S1_121_93 HuTregFroz_rep1_26 PBMC S1 Treg HuTregFroz female NA NextSeq500 44286 32140 1660
S1_1_248 HuTregFroz_rep1_27 PBMC S1 Treg HuTregFroz female NA NextSeq500 31789 20846 1192
S1_129_100 HuTregFroz_rep1_28 PBMC S1 Treg HuTregFroz female NA NextSeq500 26120 18717 1076
S1_129_210 HuTregFroz_rep1_30 PBMC S1 Treg HuTregFroz female NA NextSeq500 31539 20827 1407
S1_129_328 HuTregFroz_rep1_32 PBMC S1 Treg HuTregFroz female NA NextSeq500 48028 30451 2156
S1_129_84 HuTregFroz_rep1_33 PBMC S1 Treg HuTregFroz female NA NextSeq500 44026 22529 1504
S1_1_339 HuTregFroz_rep1_37 PBMC S1 Treg HuTregFroz female NA NextSeq500 34005 22029 1239

Total number of rows: 1749

Table truncated, full table size 160 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE111901_singlecellRNAseq_HumanTregTconv_counts.txt.gz 1.7 Mb (ftp)(http) TXT
Processed data are available on Series record
Raw data not provided for this record

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