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Series GSE110315 Query DataSets for GSE110315
Status Public on Oct 01, 2019
Title eQTL analysis of 5 DAP maize kernel
Organism Zea mays
Experiment type Expression profiling by high throughput sequencing
Summary Kernel development is accompanied by complex gene networks. Expression quantitative trait loci (eQTL) analysis is an efficient way to detect the regulatory elements of genes, especially the trans-eQTLs help to construct the regulatory networks of genes and contribute to a better understanding of the intrinsic mechanisms of biological processes. Till now, the 15 DAP (day after pollination) eQTL has been elucidated in maize kernel, but little is known about the early stage. Here, we conduct eQTL analysis for 5 DAP maize kernel using 318 maize inbred lines. The results will provide insights into the genetic basis of early kernel development.
 
Overall design The raw data have been submitted to SRA database, with the SRA Study accession (SRP119998) and BioProject accession (PRJNA413629).
 
Contributor(s) Pang J
Citation(s) 30548709
BioProject PRJNA413629
Submission date Feb 07, 2018
Last update date Nov 25, 2019
Contact name Junling Pang
E-mail(s) pjl_happy@126.com
Organization name Chinese Academy of Agricultural Sciences
Street address No.12 Zhongguancun South St.,Haidian District
City Beijing
ZIP/Postal code 100081
Country China
 
Platforms (1)
GPL17628 Illumina HiSeq 2500 (Zea mays)
Samples (318)
GSM2985981 05W002
GSM2985982 05WN230
GSM2985983 07KS4
Relations
SRA SRP119998

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE110315_5DAP_genes_fpkm-from-norm-counts.txt.gz 69.8 Mb (ftp)(http) TXT
GSE110315_5DAP_genes_read-counts.txt.gz 13.1 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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