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Series GSE109056 Query DataSets for GSE109056
Status Public on Aug 30, 2018
Title Paternal exposure to Arctic contaminants alters the sperm epigenome and induces negative pregnancy outcomes transgenerationally
Organism Rattus norvegicus
Experiment type Methylation profiling by high throughput sequencing
Summary Paternal exposure to environmentally-relevant Arctic contaminants induces adverse health outcomes and alters the sperm methylome over three generations.
Overall design Genome-wide methylation profiles of rat epididymal sperm across F1, F2 and F3 generations spermatozoa profiles (6 organochlorines exposed and 6 controls per generation)
Contributor(s) Bailey JL
Citation(s) 29750268, 34968297
Submission date Jan 10, 2018
Last update date Jan 10, 2022
Contact name Clémence Belleannee
Organization name CHU de Québec-Université Laval Research Center
Street address 2705 Bd Laurier
City Québec
ZIP/Postal code G1V 4G2
Country Canada
Platforms (1)
GPL14844 Illumina HiSeq 2000 (Rattus norvegicus)
Samples (48)
GSM2928694 HI.2763.008.Index_1.F2A
GSM2928695 HI.2763.008.Index_3.F2B
GSM2928696 HI.2763.008.Index_8.F2C
BioProject PRJNA429491
SRA SRP128759

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE109056_DMS1_hyper.perbase.20.percent.txt.gz 32.7 Kb (ftp)(http) TXT
GSE109056_DMS1_hypo.perbase.20.percent.txt.gz 20.9 Kb (ftp)(http) TXT
GSE109056_DMS2_hyper.perbase.20.percent.txt.gz 20.5 Kb (ftp)(http) TXT
GSE109056_DMS2_hypo.perbase.20.percent.txt.gz 16.8 Kb (ftp)(http) TXT
GSE109056_DMS3_hyper.perbase.20.percent.txt.gz 30.0 Kb (ftp)(http) TXT
GSE109056_DMS3_hypo.perbase.20.percent.txt.gz 34.6 Kb (ftp)(http) TXT
GSE109056_README_processed_data_description.txt 1.4 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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