GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE108770 Query DataSets for GSE108770
Status Public on Feb 04, 2020
Title Hypoxia-induced priming of microglial inflammatory gene expression is associated with TLR4 signaling H3K4me3 enrichment
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary We analyzed genome-wide H3K4me3 enichment and performed RNAseq analyses in N9 microglia cells after hypoxia exposure
Overall design Examination of H3K4me3 in five experiments in which cells were exposed to either normoxia (21% O2) or hypoxia (1% O2); examination of total mRNA from three experiments in which cells were exposed to normoxia or hypoxia
Contributor(s) Watters JJ, Kiernan EA
Submission date Jan 04, 2018
Last update date Feb 04, 2020
Contact name Jyoti Watters
Phone 6082656092
Organization name University of Wisconsin-Madison
Department CBS
Lab Jyoti Watters
Street address 2015 Linden Drive
City Madison
State/province WI
ZIP/Postal code 53706
Country USA
Platforms (2)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (28)
GSM2913084 Nx 1 H3K4me3_ChIPSeq
GSM2913085 Nx 2 H3K4me3_ChIPSeq
GSM2913086 Nx 3 H3K4me3_ChIPSeq
BioProject PRJNA428767
SRA SRP130943

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE108770_Hx_H3K4me3.ucsc.bedGraph.gz 264.4 Mb (ftp)(http) BEDGRAPH
GSE108770_Hx_Input.ucsc.bedGraph.gz 1.3 Gb (ftp)(http) BEDGRAPH
GSE108770_LPS_gene_exp.diff.gz 1.0 Mb (ftp)(http) DIFF
GSE108770_Nx_H3K4me3.ucsc.bedGraph.gz 284.1 Mb (ftp)(http) BEDGRAPH
GSE108770_Nx_Input.ucsc.bedGraph.gz 1.0 Gb (ftp)(http) BEDGRAPH
GSE108770_RAW.tar 2.6 Gb (http)(custom) TAR (of BEDGRAPH, TDF)
GSE108770_gene_exp.diff.gz 1.2 Mb (ftp)(http) DIFF
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap