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GEO accession:
Series GSE108116
Query DataSets for GSE108116
Status
Public on Feb 15, 2019
Title
UTX and 53BP1 co-regulate genetic programs for neural differentiation of human embryonic stem cells
Organisms
Homo sapiens
;
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Web link
https://doi.org/10.1038/s41593-018-0328-5
Citation(s)
30718900
Submission date
Dec 14, 2017
Last update date
Mar 27, 2019
Contact name
Beisi Xu
E-mail(s)
beisi.xu@stjude.org
Organization name
St Jude Children's Research Hosipital
Department
Center for Applied Bioinformatics
Street address
262 Danny Thomas Pl
City
Memphis
State/province
Tennessee
ZIP/Postal code
38105
Country
USA
Platforms (5)
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GPL11154
Illumina HiSeq 2000 (Homo sapiens)
GPL16791
Illumina HiSeq 2500 (Homo sapiens)
GPL20301
Illumina HiSeq 4000 (Homo sapiens)
GPL24247
Illumina NovaSeq 6000 (Mus musculus)
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
Samples (67)
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GSM2890225
hESC_53BP1-Abcam replicate 1
GSM2890226
hESC_53BP1-Abcam replicate 2
GSM2890227
hESC_53BP1-Abcam replicate 3
GSM2890228
hNPC_53BP1-Abcam replicate 1
GSM2890229
hESC_53BP1-Novus replicate 1
GSM2890230
hESC_53BP1-Novus replicate 2
GSM2890231
hESC_53BP1-Novus replicate 3
GSM2890232
hNPC_53BP1-Novus replicate 1
GSM2890233
hESC_UTX-ab84190 replicate 1
GSM2890234
hESC_UTX-ab84190 replicate 2
GSM2890235
hESC_UTX-ab84190 replicate 3
GSM2890236
hESC_UTX-ab84190 replicate 4
GSM2890237
hESC_UTX-ab84190 replicate 5
GSM2890238
hNPC_UTX-ab84190 replicate 1
GSM2890239
hESC_UTX-ab91231 replicate 1
GSM2890240
H3K27ac-CtrlneuronD17 replicate 1
GSM2890241
H3K27me3-CtrlneuronD17 replicate 1
GSM2890242
H3K27ac-53BP1KOneuronD17 replicate 1
GSM2890243
H3K27ac-53BP1KOneuronD17 replicate 2
GSM2890244
H3K27me3-53BP1KOneuronD17 replicate 1
GSM2890245
H3K27me3-53BP1KOneuronD17 replicate 2
GSM2890246
INPUT-hESC
GSM2890247
INPUT-hNPC
GSM2890248
RNA-hESC-53BP1KO1 replicate 1
GSM2890249
RNA-hESC-53BP1KO2 replicate 1
GSM2890250
RNA-hESC-53BP1KO3 replicate 1
GSM2890251
RNA-hESC-Ctl replicate 1
GSM2890252
RNA-hESC-Ctl replicate 2
GSM2890253
RNA-hESC-Ctl replicate 3
GSM2890254
RNA-hESC-Ctl replicate 4
GSM2890255
RNA-hESC-Ctl replicate 5
GSM2890256
RNA-hESC-UTXKD1
GSM2890257
RNA-hESC-UTXKD2
GSM2890258
RNA-hESC-UTXKD3
GSM2890259
RNA-hNPC-Ctl replicate 1
GSM2890260
RNA-hNPC-Ctl replicate 2
GSM2890261
RNA-hNPC-Ctl replicate 3
GSM2890262
RNA-hNeuronD22-53BP1KO1 replicate 1
GSM2890263
RNA-hNeuronD22-53BP1KO1 replicate 2
GSM2890264
RNA-hNeuronD22-53BP1KO2 replicate 1
GSM2890265
RNA-hNeuronD22-Ctl replicate 1
GSM2890266
RNA-hNeuronD22-Ctl replicate 2
GSM3398380
RNA-mNPC-53BP1KO replicate 1
GSM3398381
RNA-mNPC-53BP1KO replicate 2
GSM3398382
RNA-mNPC-53BP1KO replicate 3
GSM3398383
RNA-mNPC-53BP1KO replicate 4
GSM3398384
RNA-mNPC-Ctrl replicate 1
GSM3398385
RNA-mNPC-Ctrl replicate 2
GSM3398386
RNA-mNPC-Ctrl replicate 3
GSM3398387
RNA-mNPC-Ctrl replicate 4
GSM3398388
RNA-Organoid-D45_53BP1KO1 replicate 1
GSM3398389
RNA-Organoid-D45_53BP1KO1 replicate 2
GSM3398390
RNA-Organoid-D45_53BP1KO2 replicate 1
GSM3398391
RNA-Organoid-D45_53BP1KO2 replicate 2
GSM3398392
RNA-Organoid-D45_53BP1KO3 replicate 1
GSM3398393
RNA-Organoid-D45_53BP1KO3 replicate 2
GSM3398394
RNA-Organoid-D45_Ctrl replicate 1
GSM3398395
RNA-Organoid-D45_Ctrl replicate 2
GSM3398414
hNeuron_UTX-Bethyl-53BP1KO replicate 1
GSM3398415
hNeuron_UTX-Bethyl-53BP1KO replicate 2
GSM3398416
hNeuron_UTX-Bethyl-Ctrl
GSM3398417
hESC_53BP1-Novus-UTXKD replicate 1
GSM3398418
hESC_53BP1-Novus-UTXKD replicate 2
GSM3398419
hESC_53BP1-Novus-UTXKD replicate 3
GSM3398420
H3K79me2-53BP1KO-hESC replicate 1
GSM3398421
H3K79me2-53BP1KO-hESC replicate 2
GSM3398422
H3K79me2-Ctrl-hESC
This SuperSeries is composed of the following SubSeries:
GSE108114
UTX and 53BP1 co-regulate genetic programs for neural differentiation of human embryonic stem cells [ChIP-seq]
GSE108115
UTX and 53BP1 co-regulate genetic programs for neural differentiation of human embryonic stem cells [RNA-seq]
GSE120333
UTX and 53BP1 co-regulate genetic programs for neural differentiation of human embryonic stem cells [mouse RNA-seq]
Relations
BioProject
PRJNA422467
Download family
Format
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TXT
Supplementary file
Size
Download
File type/resource
GSE108116_RAW.tar
3.9 Mb
(http)
(custom)
TAR (of BED, TXT)
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