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Series GSE107953 Query DataSets for GSE107953
Status Public on Aug 17, 2018
Title YTHDF2 irCLIP-seq
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Other
Summary We performed irCLIP-seq to determine the mRNA targets of YTHDF2 in mouse hematopoietic progenitor cell line HPC-7
 
Overall design Three replicates of irCLIP-seq mouse hematopoietic stem cells.
 
Contributor(s) Li Z, Gogol MM
Citation(s) 30065315
Submission date Dec 12, 2017
Last update date May 15, 2019
Contact name Madelaine Gogol
Organization name Stowers Institute
Department Computational Biology Core
Street address 1000 E. 50th Street
City Kansas City
State/province MO
ZIP/Postal code 64110
Country USA
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (3)
GSM2884191 YTHDF2 irCLIP-seq replicate 1
GSM2884192 YTHDF2 irCLIP-seq replicate 2
GSM2884193 YTHDF2 irCLIP-seq replicate 3
This SubSeries is part of SuperSeries:
GSE107957 Hematopoietic stem cell expansion through suppression of YTHDF2-mediated m6A-marked mRNA decay
Relations
BioProject PRJNA422164
SRA SRP126649

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE107953_RAW.tar 221.0 Mb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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