GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE107614 Query DataSets for GSE107614
Status Public on Dec 01, 2018
Title Mutant IDH1 promotes glioma formation in vivo [Bisulfite-seq]
Organism Mus musculus
Experiment type Methylation profiling by high throughput sequencing
Summary Genomic DNA from IDH1 mutant and WT tumors were used to detect genome wide methylation using Agilent SureSelect XT Mouse Methyl-Seq Enrichment System capture kit following manufacturer’s recommendations.
Overall design Whole genome methylation analysis on IDH mutant and WT cell lines
Contributor(s) Philip B, Silvis MR, Yu DX, Shin CH, Robinson JP, Robinson GL, Angel SN, Welker AE, Tripp SR, Sonnen JA, VanBrocklin MW, Gibbons RJ, Looper RE, Colman H, Holmen SL
Citation(s) 29719265
Submission date Dec 01, 2017
Last update date May 15, 2019
Contact name Sheri Holmen
Phone 801-213-4237
Organization name University of Utah
Department Surgery
Street address 2000 Circle of Hope Dr.
City Salt Lake City
State/province UT
ZIP/Postal code 84112
Country USA
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (8)
GSM2872620 13036
GSM2872621 13033
GSM2872622 13029
This SubSeries is part of SuperSeries:
GSE107616 Mutant IDH1 promotes glioma formation in vivo
BioProject PRJNA420779
SRA SRP125979

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE107614_RAW.tar 393.4 Mb (http)(custom) TAR (of BW, TAR)
GSE107614_peaks.bed.gz 2.7 Mb (ftp)(http) BED
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap