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Series GSE107438 Query DataSets for GSE107438
Status Public on Dec 01, 2017
Title 25D3 and 1,25D3 target gene profiles in LNCaP
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Most prostate cancers depend on androgen and androgen receptor signaling for their proliferation and development, which underpins the efficacy of antiandrogens as powerful therapeutic agents for prostate cancers. On the other hand, interaction between AR and other nuclear hormone receptors (NRs) such as glucocorticoid receptor in the prostatic cancer or between AR and ER in breast cancers depicts the close association or “crosstalk” of AR with other NRs in terms of the new approach toward the management of hormone-resistant prostate/breast cancers. Along with this line, chemopreventive and antiproliferative action of 1,25(OH)2D3 (abbreviated as 1,25D3), an active metabolite of vitamin D3, during the management of prostate and/or breast cancers has been recently rigorously argued. We found that in its physiological concentration, 25(OH)D3 (abbreviated as 25D3), the precursor metabolite of 1,25D3 and widely-recognized as an inactive vitamin D because of its much weaker binding activity to vitamin D receptor (VDR) compared to 1,25D3, has a gene transcription profile similar to 1,25D3 in some prostate cancers. In this study, we investigated whole genome target gene profiles and intracellular behaviors of VDR after administration of 25D3 or 1,25D3 in prostate cancer LNCaP cells to elucidate the hormonal activity of 25D3. First, we confirmed that LNCaP cells possessed functional 25D3-VDR as well as 1,25D3-VDR signaling systems by qRT-PCR. By immunofluorescent examination of nuclear translocation, western blotting and most importantly, knockdown of CYP27B1 and/or VDR after the introduction of the respective siRNA into these cells, we found that, just like 1,25D3, 10-7 M of 25D3, which is within its uppermost physiological concentrations in the bloodstream, induced VDR nuclear import and robustly activated its target gene such as CYP24A1 in the virtual absence of CYP27B1 expression in LNCaP cells. These results indicate that the unconverted 25D3 alone behaved similarly to 1,25D3 in activating CYP24A1 mRNA expression. Our comprehensive microarray analyses verified the bioactivity of 25D3 and we found that 25D3 target gene profiles largely matched those of 1,25D3, while the presence a small subset of 25D3-, or 1,25D3-specific target genes were not excluded. The concentration of 1,25D3 in the culture media after 25D3 treatment with or without siRNA for CYP27B1 mRNA was below the lower limit of the sensitivity measured by ultrasensitive LC/MS/MS method. These results indicated that 25D3 shares bioactivity with 1,25D3 without conversion to the latter at least in some prostate cancer cells.
 
Overall design Total RNA from the LNCaP cells transfected with control siRNA (siCT), siRNA for CYP27B1 (siCYP27B1) or siRNA for VDR (siVDR) followed by 10-7 M of 25D3 or 1,25D3 treatment for another 24 h was isolated using an RNeasy Mini Kit (Qiagen, Hilden, Germany) according to the manufacturer's instructions. RNA samples were quantified using an ND-1000 spectrophotometer (NanoDrop Technologies, Wilmington, DE), and their quality was confirmed using an Experion System (Bio-Rad Laboratories, Hercules, CA). cDNA microarray analysis was performed using an authorized custom analysis service provider.
 
Contributor(s) Susa T, Okazaki T
Citation(s) 29899561
Submission date Nov 28, 2017
Last update date Jun 19, 2018
Contact name Takao Susa
E-mail(s) tsusa@med.teikyo-u.ac.jp
Organization name Teikyo University School of Medicine
Department Department of Biochemistry
Street address 2-11-1, Kaga
City Itabashi-ku
State/province Tokyo
ZIP/Postal code 173-8605
Country Japan
 
Platforms (1)
GPL17077 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
Samples (8)
GSM2867353 siCT V1
GSM2867354 siCT 1,25D3
GSM2867355 siCT V2
Relations
BioProject PRJNA420078

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE107438_RAW.tar 98.8 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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