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Series GSE106935 Query DataSets for GSE106935
Status Public on Mar 01, 2018
Title 5hmC-seq in human kidney DNA
Organism Homo sapiens
Experiment type Methylation profiling by high throughput sequencing
Summary DNA IP for 5hmC modified CpGs to determine 5hmC paterns across male human kidney
Overall design We carry out 5-hydroxymethylation DNA immunoprecipitation (hmeDIP) on covaris sheared genomic DNA (Amsbio), prior to sequencing Ion Proton P1 to report on the genome-wide 5hmC patterns.
Contributor(s) Thomson JP, Fawkes A
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Submission date Nov 15, 2017
Last update date May 15, 2019
Contact name John Paterson Thomson
Organization name University of Edinburgh
Department MRC Human Genetics Unit
Lab Meehan
Street address Crewe Road
City Edinburgh
ZIP/Postal code EH4 2XU
Country United Kingdom
Platforms (1)
GPL17303 Ion Torrent Proton (Homo sapiens)
Samples (2)
GSM2857796 human_kidney_5hmC
GSM2857797 human_kidney_5hmC input
BioProject PRJNA418466
SRA SRP125041

Download family Format
SOFT formatted family file(s) SOFTHelp
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Supplementary file Size Download File type/resource
GSE106935_RAW.tar 114.1 Mb (http)(custom) TAR (of BEDGRAPH)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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