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| Status |
Public on Jun 04, 2020 |
| Title |
Transcriptional profile of wox5-1 and seu-3 mutants |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
The goal of this dataset was to transcriptionally profile the roots of wox5-1 and seu-3 mutants. To accomplish this, we collected 1mm of tissue from the root tip of each mutant as well as Col-0 as a control. RNA was extracted from root tissue, libraries were prepared, and RNA-seq was performed. FPKM values were calulcated using Cufflinks.
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| Overall design |
Approximately 1mm of the root tip was collected from wox5-1, seu-3, and Col-0 Arabidopsis plants at 5 days post-stratification. RNA was extracted, and RNA-seq was performed.
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| Contributor(s) |
Clark NM, Fisher AP, Sozzani R |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Oct 13, 2017 |
| Last update date |
Jun 04, 2020 |
| Contact name |
Natalie M Clark |
| E-mail(s) |
nmclark2@iastate.edu, nclark@broadinstitute.org
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| Organization name |
Iowa State University
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| Department |
Plant Pathology and Microbiology
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| Lab |
Walley Lab
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| Street address |
Advanced Teaching and Research Building 2213 Pammel Drive
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| City |
Ames |
| State/province |
IA |
| ZIP/Postal code |
50011 |
| Country |
USA |
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| Platforms (1) |
| GPL17639 |
Illumina HiSeq 2500 (Arabidopsis thaliana) |
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| Samples (9)
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| Relations |
| BioProject |
PRJNA414206 |
| SRA |
SRP119913 |
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