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Series GSE104030 Query DataSets for GSE104030
Status Public on Sep 01, 2018
Title Transcriptome profiling of liver samples from WT and AKAP12 KO mice after inducing fibrosis resolution
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary AKAP12 KO mice showed reduced fibrosis resolution in DDC-induced hepatic fibrosis and resolution model. To compare gene expression profile between genotypes, transcriptome was analyzed by RNA sequencing.
Overall design age matched, weight matched WT and AKAP12 KO mice were fed 0.1% DDC-containing diet for 3 weeks followed by normal diet for another 2 weeks. Liver transcriptome was analyzed by RNA sequencing. Three mice per genotype were applied for analysis
Contributor(s) Lee HS, Kim K, Son T
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Submission date Sep 20, 2017
Last update date Jul 25, 2021
Contact name Hye Shin Lee
Phone 82-2-880-9180
Organization name Seoul National University
Department College of pharmacy
Street address 1Gwanakro
City Seoul
ZIP/Postal code 08826
Country South Korea
Platforms (1)
GPL16417 Illumina MiSeq (Mus musculus)
Samples (6)
GSM2787976 WT-Rep1
GSM2787977 WT-Rep2
GSM2787978 WT-Rep3
BioProject PRJNA408066
SRA SRP118265

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE104030_RAW.tar 760.0 Kb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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