|
| Status |
Public on May 16, 2018 |
| Title |
The role of DNMT3A and TET1 in regulating promoter epigenetic landscapes |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| |
|
| Citation(s) |
30001199 |
| |
| Submission date |
Jul 08, 2017 |
| Last update date |
Jul 25, 2021 |
| Contact name |
xueqiu lin |
| E-mail(s) |
xueqiu@fredhutch.org
|
| Organization name |
Stanford University
|
| Street address |
450 Serra Mall
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305 |
| Country |
USA |
| |
|
| Platforms (2) |
| GPL13112 |
Illumina HiSeq 2000 (Mus musculus) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
|
| Samples (61)
|
|
| This SuperSeries is composed of the following SubSeries:
|
| GSE100951 |
Genome-wide maps of Dnmt3a1 binding in WT and Tet1-/- J1 ES cells |
| GSE100952 |
Dnmt3a KO CMS-Seq |
| GSE100953 |
Genome-wide maps of histone modifications in WT, Dnmt3a-/- and Tet1-/- J1 ES cells. |
| GSE100954 |
Quantitative analysis of WT, Dnmt3a-/-, Dnmt3b-/- and Tet1-/- J1 ES cell transcriptomes |
| GSE100955 |
Genome-wide maps of Tet1 binding in [WT, Tet1-Flag] and [Dnmt3a-/-, Tet1-Flag] J1 ES cells |
| GSE100956 |
WGBS assessment of global methylation alterations in Dnmt3aKO or Dnmt3bKO mouse embryonic stem cells |
| GSE112311 |
Genome-wide maps of histone modifications (SpikeIn) and Suz12 in WT, Dnmt3a-/-, Tet1-/- J1 and DKO ES cells. |
| GSE112312 |
WGBS assessment of global methylation alterations in Dnmt3a1KO , Dnmt3a2KO, Dnmt3aKO, Tet1KO and DKO mouse embryonic stem cells |
|
| Relations |
| BioProject |
PRJNA393520 |
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