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Series GSE100953 Query DataSets for GSE100953
Status Public on May 16, 2018
Title Genome-wide maps of histone modifications in WT, Dnmt3a-/- and Tet1-/- J1 ES cells.
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Using ChIP-seq to assess changes of histone modifications in response to Dnmt3a or Tet1 deficiency.
 
Overall design Examination of H3K4me3 and H3K27me3 in WT, Dnmt3a-/- and Tet1-/- ES cells.
 
Contributor(s) Cullen SM, Lin X, Gu T, Li W, Goodell MA
Citation(s) 30001199
Submission date Jul 08, 2017
Last update date Jul 25, 2021
Contact name xueqiu lin
E-mail(s) xueqiu@fredhutch.org
Organization name Stanford University
Street address 450 Serra Mall
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (8)
GSM2698033 WT H3K4me3_ChIPSeq
GSM2698034 WT H3K27me3_ChIPSeq
GSM2698035 3aKO H3K4me3_ChIPSeq
This SubSeries is part of SuperSeries:
GSE100957 The role of DNMT3A and TET1 in regulating promoter epigenetic landscapes
Relations
BioProject PRJNA393521
SRA SRP111381

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE100953_RAW.tar 1.3 Gb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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