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Series GSE100673 Query DataSets for GSE100673
Status Public on Dec 06, 2017
Title RNA-seq of chicken small yellow follicles with different FSHR expression level
Organism Gallus gallus
Experiment type Expression profiling by high throughput sequencing
Summary The aim of study was to identify the differentially expressed genes in SYF by using Illumina RNA deep sequencing, one SYF has the highest expression level of FSHR, the other has the lowest expression level of FSHR. We sampled six follicles from three chickens.In order to discover the key genes that regulate the process of follicle selection. From RNA-seq results, we got 26.63G reads,when mapping the reads to chicken genome, 75.13%-78.40% reads were successfully mapped, and more than 98% reads were unique.and we found 1382 new genes,functional annotation of the new gene was also performed.
 
Overall design RNA-seq of six small yellow follicles come from three chickens
 
Contributor(s) Wang Y, Jiang Y
Citation(s) 29187833
Submission date Jun 29, 2017
Last update date May 15, 2019
Contact name Wang Yiya
E-mail(s) wangyiyaxwz@126.com
Phone 18653095039
Organization name Shandong Agricultural University
Street address Daizong Street no.61
City Tai'an
State/province Shandong
ZIP/Postal code 271018
Country China
 
Platforms (1)
GPL19005 Illumina HiSeq 2500 (Gallus gallus)
Samples (6)
GSM2691022 T1(small yellow follicle with higher expression level of FSHR)
GSM2691023 T2(small yellow follicle with higher expression level of FSHR)
GSM2691024 T3(small yellow follicle with higher expression level of FSHR)
Relations
BioProject PRJNA392469
SRA SRP110774

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE100673_FPKM.xls.gz 2.5 Mb (ftp)(http) XLS
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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