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Platform GPL9903 Query DataSets for GPL9903
Status Public on May 11, 2011
Title Agilent-022770 Macaca mulatta 951K rheMac2 TargetedRegionsRSmith
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Macaca mulatta
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Targeted Regions with large backbone

Arrays of this design have barcodes that begin with 16022770 or 2522770.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Jan 13, 2010
Last update date May 11, 2011
Contact name Omer Gokcumen
E-mail(s) gokcumen@gmail.com
Phone 7166454937
Organization name University at Buffalo
Department Biological Sciences
Street address 109 Cooke Hall
City Buffalo
State/province New York
ZIP/Postal code 14260
Country USA
 
Samples (17) GSM497038, GSM497039, GSM497040, GSM497041, GSM497042, GSM497043 
Series (1)
GSE19881 Rhesus macaque aCGH

Data table header descriptions
ID Agilent feature number
ProbeID
COL Column
ROW Row
SEQUENCE sequence of probe
SPOT_ID
Name
RANGE_GB
RANGE_START
RANGE_END

Data table
ID ProbeID COL ROW SEQUENCE SPOT_ID Name RANGE_GB RANGE_START RANGE_END
1 HsCGHBrightCorner 534 1824 --control HsCGHBrightCorner
2 DarkCorner 534 1822 --control DarkCorner
3 DarkCorner 534 1820 --control DarkCorner
4 A_02_P11972172 534 1818 GGTTAACGGCATATTCATGTATCATTTTTTACCTTCTTTATTTTCTCCCACTCCACATCT chr5:176729713-176729772 NC_007862.1 176729713 176729772
5 A_02_P13273453 534 1816 GTTGCCTACACGTTCAGTGACTCCTGGTCAAGGTCTTGCTTCATC chr9:132394921-132394965 NC_007866.1 132394921 132394965
6 A_02_P12237189 534 1814 CAGTGAAACATTCATTTCCCAGAGTTTAAGTCCATCTGAGATCTTTAGGGCACTAA chr6:118874027-118874082 NC_007863.1 118874027 118874082
7 A_02_P10674639 534 1812 CTAGTTCTCTCAGGTTTAACCTCTTCTTTCAATAAAGCCCTTCCCACCAATACTTTCT chr2:101043594-101043651 NC_007859.1 101043594 101043651
8 A_02_P12385312 534 1810 TCTGCTCATCCAACTTTGGTCTTTCATCATAAGACTCACTACACTATATCTGTTCATTGA chr7:16195486-16195545 NC_007864.1 16195486 16195545
9 A_02_P10736570 534 1808 ATATGAATAGTTCTCATTCCAGAAAATATTTTAAGCAACTCATTGTTATTTGGCAGGAGA chr2:131315610-131315669 NC_007859.1 131315610 131315669
10 A_02_P12341212 534 1806 ACTGGTTAAATTGCTTAAATCTCTATTCCCATTTTTTTTTCCTATTTCCAATTTTTGGGT chr6:168708286-168708345 NC_007863.1 168708286 168708345
11 A_02_P13795740 534 1804 TATCTTCACCATAATCCAACCCTTTTGTTATCTTTAAAGCAAAACTCCTATTGAGGCAGG chr12:31283832-31283891 NC_007869.1 31283832 31283891
12 A_02_P12128172 534 1802 AGAATTTATTTCTACAGAAGTCTCAAGAACCATTGTTGGAGAATATAGGCCCTCTTTTCT chr6:68988427-68988486 NC_007863.1 68988427 68988486
13 A_02_P10344766 534 1800 TGAAGATAATCAAGTGTTTCTATAATTGATTGACTTATGTCATTGTGAGTGTTGTGCCCG chr1:174113324-174113383 NC_007858.1 174113324 174113383
14 A_02_P15694495 534 1798 GTTTCTAAACAACTCAGTATTAAACTAATGGAATGACTGTTTCTGCTAATGACCTGAAGG chrX:146033551-146033610 NC_007878.1 146033551 146033610
15 A_02_P13832564 534 1796 AGCAATAGTTACCTTTGCTTTGGCAACAAATACCTTTGTAAATGTCTTGATCTTGTTTCT chr12:47063001-47063060 NC_007869.1 47063001 47063060
16 A_02_P10364574 534 1794 CCCTCCACTGCCTGTCTTTCGATCTTTACCATCTGAAAGAGGAATAAAGAT chr1:183795173-183795223 NC_007858.1 183795173 183795223
17 A_02_P15013291 534 1792 GGGCTTCAATATCTTCTATATTTCAAAGATACTTTTACTGGAGTTTAAAGACACTAAGGT chr17:65066186-65066245 NC_007874.1 65066186 65066245
18 A_02_P11765697 534 1790 GTCTGGATGCGCAAAAATCTAAGAACCCAGGGGTTTCTGAGAAGAAG chr5:80744881-80744927 NC_007862.1 80744881 80744927
19 A_02_P14097951 534 1788 AAAAAACAAACAAAAATATCCCAAGGGAAAAAAGAATGAAAACTAGAAAGTGAATAAAAA chr13:61448383-61448442 NC_007870.1 61448383 61448442
20 A_02_P15645673 534 1786 ATGGCAGAGGATATTTGAGTCCATTCTTAAAGATTACAAACAAACCATTATTAAATTCGT chrX:116318277-116318336 NC_007878.1 116318277 116318336

Total number of rows: 974016

Table truncated, full table size 135704 Kbytes.




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