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Status
Public on Jan 16, 2010
Title
Duke Taeniopygia guttata 45K
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Taeniopygia guttata
Manufacturer
Agilent
Manufacture protocol
Using Agilent eArray 5.4, a web-based application, we designed custom microarrays. The microarrays are manufactured using a proprietary non-contact industrial inkjet printing process, in which oligo monomers are deposited uniformly onto specially-prepared glass slides. This in situ synthesis process prints 60-mer length oligonucleotide probes, base-by-base, from digital sequence files. The precise inkjet process enables the delivery of extremely small, accurate volumes (picoliters) of the chemicals to be spotted. Standard phosphoramidite chemistry used in the reactions allows for very high coupling efficiencies to be maintained at each step in the synthesis of the oligonucleotide. Agilent’s real time quality control inspection system verifies chemical deposition at each step in the process to minimize or eliminate feature drop-out and premature truncation of the oligonucleotide probe.
Catalog number
AMADID - 022706
Contributor(s)
Whitney O , Pfenning A , Howard J , Jarvis E
Submission date
Jan 05, 2010
Last update date
Jan 18, 2013
Contact name
Osceola Whitney
E-mail(s)
whitney@neuro.duke.edu
Phone
919-681-1681
Fax
919-681-0877
URL
http://songbirdtranscriptome.net/
Organization name
Duke University Medical Center
Department
Neurobiology
Lab
Erich Jarvis Lab
Street address
Research Drive, Bryan Research Building, Room 401E
City
Durham
State/province
NC
ZIP/Postal code
27710
Country
USA
Samples (272)
GSM497501 , GSM497502 , GSM497503 , GSM497504 , GSM497505 , GSM497506
GSM497507 ,
GSM497508 ,
GSM497509 ,
GSM497510 ,
GSM497511 ,
GSM497512 ,
GSM497513 ,
GSM497514 ,
GSM497515 ,
GSM497516 ,
GSM497517 ,
GSM497518 ,
GSM497519 ,
GSM497520 ,
GSM497521 ,
GSM497522 ,
GSM497523 ,
GSM497524 ,
GSM497525 ,
GSM497526 ,
GSM497527 ,
GSM497528 ,
GSM497529 ,
GSM497530 ,
GSM497531 ,
GSM497532 ,
GSM497533 ,
GSM497534 ,
GSM497535 ,
GSM497536 ,
GSM497537 ,
GSM497538 ,
GSM497539 ,
GSM497540 ,
GSM497541 ,
GSM497542 ,
GSM497543 ,
GSM497544 ,
GSM497545 ,
GSM497546 ,
GSM629080 ,
GSM701872 ,
GSM701873 ,
GSM701874 ,
GSM701875 ,
GSM701876 ,
GSM701877 ,
GSM701878 ,
GSM701879 ,
GSM701880 ,
GSM701881 ,
GSM701882 ,
GSM701883 ,
GSM701884 ,
GSM701885 ,
GSM701886 ,
GSM701887 ,
GSM701888 ,
GSM701889 ,
GSM701890 ,
GSM701891 ,
GSM701892 ,
GSM701893 ,
GSM701894 ,
GSM701895 ,
GSM701896 ,
GSM701897 ,
GSM701898 ,
GSM825168 ,
GSM825169 ,
GSM825170 ,
GSM825171 ,
GSM825172 ,
GSM825173 ,
GSM825174 ,
GSM825175 ,
GSM825176 ,
GSM825177 ,
GSM825178 ,
GSM825179 ,
GSM825180 ,
GSM825181 ,
GSM825182 ,
GSM825183 ,
GSM825184 ,
GSM825185 ,
GSM825186 ,
GSM825187 ,
GSM825188 ,
GSM825189 ,
GSM825190 ,
GSM825191 ,
GSM825192 ,
GSM825193 ,
GSM825194 ,
GSM825195 ,
GSM825196 ,
GSM825197 ,
GSM825198 ,
GSM825199 ,
GSM825200 ,
GSM825201 ,
GSM825202 ,
GSM825203 ,
GSM825204 ,
GSM825205 ,
GSM825206 ,
GSM825207 ,
GSM825208 ,
GSM825209 ,
GSM825210 ,
GSM825211 ,
GSM825212 ,
GSM825213 ,
GSM825214 ,
GSM825215 ,
GSM825216 ,
GSM825217 ,
GSM825218 ,
GSM825219 ,
GSM825220 ,
GSM825221 ,
GSM825222 ,
GSM825223 ,
GSM825224 ,
GSM825225 ,
GSM825226 ,
GSM825227 ,
GSM825228 ,
GSM825229 ,
GSM825230 ,
GSM825231 ,
GSM825232 ,
GSM825233 ,
GSM825234 ,
GSM825235 ,
GSM825236 ,
GSM825237 ,
GSM825238 ,
GSM825239 ,
GSM825240 ,
GSM825241 ,
GSM825242 ,
GSM825243 ,
GSM825244 ,
GSM825245 ,
GSM825246 ,
GSM825247 ,
GSM825248 ,
GSM825249 ,
GSM825250 ,
GSM825251 ,
GSM825252 ,
GSM825253 ,
GSM825254 ,
GSM825255 ,
GSM825256 ,
GSM825257 ,
GSM825258 ,
GSM825259 ,
GSM825260 ,
GSM825261 ,
GSM825262 ,
GSM825263 ,
GSM825264 ,
GSM825265 ,
GSM825266 ,
GSM825267 ,
GSM825268 ,
GSM825269 ,
GSM825270 ,
GSM825271 ,
GSM825272 ,
GSM825273 ,
GSM825274 ,
GSM825275 ,
GSM825276 ,
GSM825277 ,
GSM825278 ,
GSM825279 ,
GSM825280 ,
GSM825281 ,
GSM825282 ,
GSM825283 ,
GSM825284 ,
GSM825285 ,
GSM825286 ,
GSM825287 ,
GSM825288 ,
GSM825289 ,
GSM825290 ,
GSM825291 ,
GSM825292 ,
GSM825293 ,
GSM825294 ,
GSM825295 ,
GSM825296 ,
GSM825297 ,
GSM825298 ,
GSM825299 ,
GSM825300 ,
GSM825301 ,
GSM825302 ,
GSM825303 ,
GSM825304 ,
GSM825305 ,
GSM825306 ,
GSM825307 ,
GSM825308 ,
GSM825309 ,
GSM825310 ,
GSM825311 ,
GSM825312 ,
GSM825313 ,
GSM825314 ,
GSM825315 ,
GSM825316 ,
GSM825317 ,
GSM825318 ,
GSM825319 ,
GSM825320 ,
GSM825321 ,
GSM825322 ,
GSM825323 ,
GSM825324 ,
GSM825325 ,
GSM825326 ,
GSM825327 ,
GSM825328 ,
GSM825329 ,
GSM825330 ,
GSM825331 ,
GSM825332 ,
GSM825333 ,
GSM825334 ,
GSM825335 ,
GSM825336 ,
GSM825337 ,
GSM832501 ,
GSM832502 ,
GSM832503 ,
GSM832504 ,
GSM832505 ,
GSM832506 ,
GSM832507 ,
GSM832508 ,
GSM832509 ,
GSM832510 ,
GSM832511 ,
GSM832512 ,
GSM832513 ,
GSM832514 ,
GSM832515 ,
GSM832516 ,
GSM832517 ,
GSM832518 ,
GSM832519 ,
GSM832520 ,
GSM832521 ,
GSM832522 ,
GSM832523 ,
GSM832524 ,
GSM832525 ,
GSM832526 ,
GSM832527 ,
GSM832528
Series (4)
GSE19900
The genome of a songbird
GSE28395
Avian arcopallium
GSE33365
The singing genome: Core and region enriched gene expression define behaviorally regulated gene networks
Data table header descriptions
ID
featureid
feature ID
cloneid
clone ID
clusterid
cluster ID
subclusterid
subcluster ID
location
location
library
library number
status
status
estimaid
estima ID
ncEst
non-coding expressed sequence tag
finalRNA
final RNA
ensid
ensembl ID
ensScore
ensembl score
enstype
ensembl type
esnchr
ensembl chromasome
ensname
ensembl symbol
ensdesc
ensembl description
dukename
duke name
dukedescription
duke description
chickenname
chicken name
chickendescription
chicken description
humanname
human name
humandescription
human description
finalName
final name
finalDesc
final description
finalScore
final score
evidence
evidence
CLONE_ID
SPOT_ID
SEQUENCE
sequence of probe
Data table
ID
featureid
cloneid
clusterid
subclusterid
location
library
status
estimaid
ncEst
finalRNA
ensid
ensScore
enstype
esnchr
ensname
ensdesc
dukename
dukedescription
chickenname
chickendescription
humanname
humandescription
finalName
finalDesc
finalScore
evidence
CLONE_ID
SPOT_ID
SEQUENCE
GE_BrightCorner
GE_BrightCorner
GE_BrightCorner
--GE_BrightCorner
DarkCorner
DarkCorner
DarkCorner
--DarkCorner
DarkCorner-2
DarkCorner-2
DarkCorner
--DarkCorner-2
DarkCorner-3
DarkCorner-3
DarkCorner
--DarkCorner-3
DarkCorner-4
DarkCorner-4
DarkCorner
--DarkCorner-4
DarkCorner-5
DarkCorner-5
DarkCorner
--DarkCorner-5
DarkCorner-6
DarkCorner-6
DarkCorner
--DarkCorner-6
DarkCorner-7
DarkCorner-7
DarkCorner
--DarkCorner-7
DarkCorner-8
DarkCorner-8
DarkCorner
--DarkCorner-8
DarkCorner-9
DarkCorner-9
DarkCorner
--DarkCorner-9
DarkCorner-10
DarkCorner-10
DarkCorner
--DarkCorner-10
0205P0030B17
0205P0030B17
0205P0030B17
20722A060BAD472A9A449CF0598A4F8E
EA9353354BBF42A6A73BFCFFF795DB64
Ill
5
1
SB05030B1A09.f1
1
1
null
unknown 0061P0018G08
LOR
loricrin
FOXO3
5
"(5)xeno-refseq:FOXO3(x5):1399,FOXO5(x1):1399,LOC100301621(x1):1399,(2):human_blast,finalname"
SB05030B1A09.f1
AGCTCTTAACTGTACGAGCTCCTGCGGATGAAAGTCTGCTTTTGGGACAGGCCCCGCAGT
0202P0024M14
0202P0024M14
0202P0024M14
BD6FAF8D48C74C55B2E910732BDF96E8
CAB0739305574278A747394FFD324099
Ill
2
2
SB02024A2G07.f1
0
0
ENSTGUG00000005056
2690
protein_coding
chr19
GBAS
Protein NipSnap homolog 2 (NipSnap2)(Glioblastoma-amplified sequence) [Taeniopygia guttata]
null
unknown 0202P0024M14
GBAS
glioblastoma amplified sequence
GBAS
Protein NipSnap homolog 2 (NipSnap2)(Glioblastoma-amplified sequence) [Taeniopygia guttata]
1
"(1):finalname,(1)ensembl:GBAS(chr19):2634"
SB02024A2G07.f1
CTGTAAGTGACAATAATATTCTCTCTCTCTCTCTCAAGTGGCTCCAAGAATCAGTGTAAC
0205P0028D09
0205P0028D09
0205P0028D09
365416CD5A614043ABD48648E73074EC
FBC7579B48E543BBB84296CC25CB9979
Ill
5
2
SB05028B1B05.f1
0
0
ENSTGUG00000011720
3889
protein_coding
chr1A
PYROXD1
Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1 (EC 1.8.1.-) [Taeniopygia guttata]
null
unknown 0205P0028D09
PYROXD1
pyridine nucleotide-disulphide oxidoreductase
PYROXD1
Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1 (EC 1.8.1.-) [Source:UniProtKB/Swiss-Prot;Acc:Q8WU10]
7
"(7)xeno-refseq:PYROXD1(x5):3889,LOC100145712(x1):3889,ZGC:73254(x1):3889,human_blast,finalname,(1)ensembl:PYROXD1(chr1A):3889"
SB05028B1B05.f1
AGAGCAACCAAGTTCCCTATTAGAAAAACGATATCCCAATATTAGAGTTATACAATCTGG
0202P0019C06
0202P0019C06
0202P0019C06
1C2B3E1B0F234BBF9A76DB7EA696B353
F223FA9FF2C549EDA340F7B795768A72
Ill
2
2
SB02019A2B03.f1
0
0
ENSTGUG00000001417
3131
protein_coding
chr13
PTTG1
Securin (Pituitary tumor-transforming gene 1 protein)(hPTTG)(Tumor-transforming protein 1)(Esp1-associated protein) [Taeniopygia guttata]
null
unknown 0202P0019C06
PTTG1
pituitary tumor-transforming 1
PTTG1
Securin (Pituitary tumor-transforming gene 1 protein)(hPTTG)(Tumor-transforming protein 1)(Esp1-associated protein) [Taeniopygia guttata]
2
"(2):human_blast,finalname,(1)ensembl:PTTG1(chr13):3131"
SB02019A2B03.f1
ACATATGACAGATGTGTGAACATGGCTTCTTCACCAGCGAAGATTGAAGAGATTTCATGG
0203P0050F15
0203P0050F15
0203P0050F15
723F374E61F7447CADFF8CF47613FEA4
7B3E21C16B7F4906875F03F87C534A83
Ill
3
1
SB03050B1C08.f1
0
1
null
unknown 0203P0050F15
TRIP11
Thyroid receptor-interacting protein 11 (TRIP-11)(Golgi-associated microtubule-binding protein 210)(GMAP-210)(Trip230)(Clonal evolution-related gene on chromosome 14) [Source:UniProtKB/Swiss-Prot;Acc:Q15643]
1
(1):finalname
SB03050B1C08.f1
ATTCAGGAGGGAACTTCAGGAGGGAAGAAAGGGATGGAATACTTAAATGCCACAGTGCAA
0206P0012J11
0206P0012J11
0206P0012J11
09286EECE6F6462F974154B683A66902
A651EDE1DC174EAD91A2263E591F20F3
Ill
6
2
SB06012B1E06.f1
0
0
ENSTGUG00000011840
1668
protein_coding
chr7
SPOPL
Speckle-type POZ protein-like (HIB homolog 2)(Roadkill homolog 2) [Taeniopygia guttata]
null
unknown 0206P0012J11
SPOPL
speckle-type POZ protein-like
SPOP
Speckle-type POZ protein (HIB homolog 1)(Roadkill homolog 1) [Source:UniProtKB/Swiss-Prot;Acc:O43791]
8
"(8)xeno-refseq:SPOP(x8):1668,SPOPL(x4):1668,GM10696(x1):1668,LOC100135306(x1):1668,MGC154338(x1):1668,MGC81433(x1):1668,RGD1563667(x1):1668,ZGC:153365(x1):1668,CG9924(x1):1668,TDPOZ1(x1):1668,TDPOZ3(x1):1668,ATP4A(x5):1295,LOC733327(x1):1295,(2)ensembl:SPOPL(chr7):1668,ENSTGUG00000014779(chrUn):1295,human_blast,(1):finalname"
SB06012B1E06.f1
CAGGGCCAAATGACAAAATGAAGTGGTGCCTGAGAGTGAATCCAAAGGGATTAGATGATG
0203P0070P07
0203P0070P07
0203P0070P07
1B9B7B15A5A442BD8CB9947240719821
FAD6BECE832E4ECFAD3CDB33113EB0F2
Ill
3
2
SB03070B1H04.f1
0
0
ENSTGUG00000012845
4047
protein_coding
chr1
MED17
Mediator of RNA polymerase II transcription subunit 17 (Mediator complex subunit 17)(Cofactor required for Sp1 transcriptional activation subunit 6)(CRSP complex subunit 6)(Transcriptional coactivator CRSP77)(Vitamin D3 receptor-interacting protein comple [Taeniopygia guttata]
null
unknown 0203P0070P07
MED17
Mediator
MED17
Mediator
MED17
8
"(8)ensembl:MED17(chr1):4047,ENSTGUG00000014124(chrUn):2070,xeno-refseq:MED17(x5):4047,CRSP6(x2):4047,LOC100101325(x1):4047,human_blast,finalname"
SB03070B1H04.f1
ACCTCGGGACAGTCAATCTCTTTAAAAGACCTTTGCCAAAATCAAAACCAGGTTCTGCAC
0202P0043B09
0202P0043B09
0202P0043B09
68B6EA00710C4A2AAB134528986E5B1F
A565E1919F6240579BB7B0BA43DE9E8F
Ill
2
1
SB02043B1A05.f1
0
0
null
unknown 0202P0043B09
0
SB02043B1A05.f1
GTGATTCATGTTGGCATTTTATTTATAGGTCTAAAAGCTGTGCAGACAGCATAACTGGAT
0106P0001D01
0106P0001D01
0106P0001D01
48D6AD60C9604B92B0B1C1813B22894A
10443E1ED92A43A99B892C5105FE710D
Rock
6
1
0
0
null
unknown 0106P0001D01
0
--unknown
TGGATGCTTAAAACACAGTTGCTTGGTGAAAGAATTTAAATGGTTGTTCAATGAAGCTCA
Total number of rows: 44969 Table truncated, full table size 20818 Kbytes .
Supplementary file
Size
Download
File type/resource
GPL9856 array probes fasta.txt.gz
1013.2 Kb
(ftp) (http)
TXT