NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL9782 Query DataSets for GPL9782
Status Public on Dec 17, 2009
Title NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 5a
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Xenopus tropicalis
Manufacturer NimbleGen
Manufacture protocol According to manufacturer's protocol (Roche Nimblegen)
 
Description JGI 4.1 (UCSC xenTro2)
 
Submission date Dec 10, 2009
Last update date Dec 17, 2009
Contact name Gert Jan Veenstra
E-mail(s) g.veenstra@science.ru.nl
Phone +31 24 3610541
Organization name Radboud University
Department Molecular Developmental Biology
Street address Geert Grooteplein 28
City Nijmegen
ZIP/Postal code 6525 GA
Country Netherlands
 
Samples (1) GSM482779
Series (1)
GSE19413 ChIP-chip Designs to Interrogate the Xenopus Embryo Genome for Transcription Factor Binding and Epigenetic Regulation

Data table header descriptions
ID
SEQUENCE Sequence of oligo
Chromosome Chromosomal location
RANGE_START Chromosomal start position of oligo
LENGTH Oligo length
RANGE_END Chromosomal end position of oligo

Data table
ID SEQUENCE Chromosome RANGE_START LENGTH RANGE_END
SCAFFOLD_1000FS000100799 ACTGCCGTTTTTTCATACATCTAATATGATGCCCCCAAGGTCTGAGCTGA scaffold_1000 100799 50 100848
SCAFFOLD_1000FS000100879 GCTCTTGTACATTAGCCTGGCATACTACTACAGGTGTAACTTACACGCCA scaffold_1000 100879 50 100928
SCAFFOLD_1000FS000100979 GGAATTTTCTATTAAAGCCCTAATATAGAATGATGTTTTCTATTTAATTGCATCTCACA scaffold_1000 100979 59 101037
SCAFFOLD_1000FS000101099 TATCGCTGAGGACAGGACAGATGCCTCCATCATTTCACAGGGCAGAATAT scaffold_1000 101099 50 101148
SCAFFOLD_1000FS000101199 AATGCAGTGCTTTGCCCTACTTTTCCTATGTGATTTAGCCCGGCCTGTTT scaffold_1000 101199 50 101248
SCAFFOLD_1000FS000101299 TCTTGTAACTGGGCTCTGTAGAACTATGTGAAAAGAAAATTATTCCTTACACTTAA scaffold_1000 101299 56 101354
SCAFFOLD_1000FS000101399 GAACATTATTATTTCTGGCTTTATTTGTTTATAAAGCAGTAAGATGTAATACACAGAC scaffold_1000 101399 58 101456
SCAFFOLD_1000FS000101479 CCCTAATCTGAGCCTACAATCAAAATAGATGATAATGAATCTAATGTGTTTAGTTGGGTC scaffold_1000 101479 60 101538
SCAFFOLD_1000FS000101859 ATAATAGCCTCTATTATAATTATTACCATCCCCCAATGTTTAATGTTTCTATACATGC scaffold_1000 101859 58 101916
SCAFFOLD_1000FS000101959 TGATGCAGAAAATCAGGTACATCTGTAATACTTATAGCGTATTTATGGGCATCTATTTGCACCCA scaffold_1000 101959 65 102023
SCAFFOLD_1000FS000102059 AGTCTCTGTAGTATATTGGAAAACTGTCCTTCTCATGGAATTTAATATATTTCAAAA scaffold_1000 102059 57 102115
SCAFFOLD_1000FS000102163 CCCCAATTAAAAAGCCATTTGATTGGGTGAGCCAGAGTGATAAGAACAATGG scaffold_1000 102163 52 102214
SCAFFOLD_1000FS000102263 TGTGGAATCGGGACGCAGGTTTCCCATAGACCATTAGCATCTTCCCCAGT scaffold_1000 102263 50 102312
SCAFFOLD_1000FS000102363 CTGTAACTCGGCTCCAGCTTGCCTCTAATATATTGCCTAGGGTTTGTGCT scaffold_1000 102363 50 102412
SCAFFOLD_1000FS000102463 ACAAGTAATCAGCCAGTCATCAGAGAGAGATGCTCACACAGGGAAAGGGG scaffold_1000 102463 50 102512
SCAFFOLD_1000FS000102563 CCAACATATAAGTTATTTATGTAACCGGGGGATCGGCATTGGGATCAATTTATCATGA scaffold_1000 102563 58 102620
SCAFFOLD_1000FS000102663 TTCAAAGGGAAGAAAAAAATGGCATTTGTATAAGTAGGACTAGGCATAGGTAACA scaffold_1000 102663 55 102717
SCAFFOLD_1000FS000102763 ATAATAAAAAATAATGTTAAACTTTGCCTTTAATATTGCTTCTACCAATATTA scaffold_1000 102763 53 102815
SCAFFOLD_1000FS000102863 GTAACACTTCATCATCTCAGGACGGTGGCATTTTTTGGAGTAGATATTGTAGGA scaffold_1000 102863 54 102916
SCAFFOLD_1000FS000102963 AAGGCAAGATGGCTGCTCATACTAAAACCCCAGTAGTAACTAACTTACTTGCTTAA scaffold_1000 102963 56 103018

Total number of rows: 720000

Table truncated, full table size 76491 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL9782_2007-10-09_XT41_GV_ChIP13.ndf.gz 43.9 Mb (ftp)(http) NDF
GPL9782_2007-10-09_XT41_GV_ChIP13.pos.gz 5.7 Mb (ftp)(http) POS

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap