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Platform GPL9781 Query DataSets for GPL9781
Status Public on Dec 17, 2009
Title NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 4
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Xenopus tropicalis
Manufacturer NimbleGen
Manufacture protocol According to manufacturer's protocol (Roche Nimblegen)
 
Description JGI 4.1 (UCSC xenTro2)
 
Submission date Dec 10, 2009
Last update date Dec 17, 2009
Contact name Gert Jan Veenstra
E-mail(s) g.veenstra@science.ru.nl
Phone +31 24 3610541
Organization name Radboud University
Department Molecular Developmental Biology
Street address Geert Grooteplein 28
City Nijmegen
ZIP/Postal code 6525 GA
Country Netherlands
 
Samples (1) GSM482778
Series (1)
GSE19413 ChIP-chip Designs to Interrogate the Xenopus Embryo Genome for Transcription Factor Binding and Epigenetic Regulation

Data table header descriptions
ID
SEQUENCE Sequence of oligo
Chromosome Chromosomal location
RANGE_START Chromosomal start position of oligo
LENGTH Oligo length
RANGE_END Chromosomal end position of oligo

Data table
ID SEQUENCE Chromosome RANGE_START LENGTH RANGE_END
SCAFFOLD_342FS001219213 TTGTCTATGTGGTTTCCTCCTACTCCAAGAACATTCAGTGGGTTAATTGGCT scaffold_342 1219213 52 1219264
SCAFFOLD_342FS001219313 TACTGGGGCAGCGGCTGGCATAAATCATTTATAATTTTTTTAAACCCTTGAGGATA scaffold_342 1219313 56 1219368
SCAFFOLD_342FS001219413 CCAGTTAGGTGTTGGCTGAAATTTGTGAGAAAGTGTGTTCCAGTCACAAC scaffold_342 1219413 50 1219462
SCAFFOLD_342FS001219513 CTGGAAGTGTGAATTGTTGTGAATTTGCCATGGTAAGGATGTAAAAGCAGCATTGTAAAT scaffold_342 1219513 60 1219572
SCAFFOLD_342FS001219633 ATAAATGGCCTCTTTCATGCCTCTTCCTGTCTTCTTGGTCCATAAAAAGCATGTTACA scaffold_342 1219633 58 1219690
SCAFFOLD_342FS001219733 CTCTGAGTCTTGATCTAAGGAGTTAGCCCTCAGGTGAAACAACATAGTCAT scaffold_342 1219733 51 1219783
SCAFFOLD_342FS001219833 TCCTGTGTTTTTCAAAACCAGTATCAACCTGAGACAGAAGTTGGTGCACC scaffold_342 1219833 50 1219882
SCAFFOLD_342FS001219933 CAGTGTAGTAAAGAGTGCTTAGACTTATACACTGGGGAAACAAAACAACTGCTCTGTA scaffold_342 1219933 58 1219990
SCAFFOLD_342FS001220033 AATCATCTCAAGGAAGAGGAACATTTCTTTGAGGACAGTAACATGCTTATTTTGGACTGA scaffold_342 1220033 60 1220092
SCAFFOLD_342FS001220173 CCTGCAACACCACTTACAATGCTGCTTTGACATTCCTACCCCAGTTTCAC scaffold_342 1220173 50 1220222
SCAFFOLD_342FS001220273 CATGTAGTTTGAAAGATGAACACCTGCTTCAATAAAAATCATGGTACAGTTGTGACTGGATA scaffold_342 1220273 62 1220334
SCAFFOLD_342FS001220413 GACTGTACTATCCACAAGGGTTTAAGTGCCAGGGAATTCCCTACCACTCA scaffold_342 1220413 50 1220462
SCAFFOLD_342FS001220573 ATCTTTTCCTAGCCATCAATCAACTCACCCCCAACTAACATAGTTAGGTCGAA scaffold_342 1220573 53 1220625
SCAFFOLD_342FS001220673 CATTTACTTATAATGCAACAAAGAAGAAAGTCTCAGTAAAAGCAAATCAAAAGGCC scaffold_342 1220673 56 1220728
SCAFFOLD_342FS001220773 TTCTATTCTGTGTGCAAACATTTTGGCTGTAATTATCATCACAGTTTAAATCAGCCAAGCTGAA scaffold_342 1220773 64 1220836
SCAFFOLD_342FS001220853 CTGTCTTATGCAGACACCTTCTATCAAGAATGACTCCCTTTTCAGCTTTCAACATTG scaffold_342 1220853 57 1220909
SCAFFOLD_342FS001220953 GTATGCTCTTGTTTGGCAATTACAGCAAAAAGACCTAAGTAACAAGTTGGTGCTTTC scaffold_342 1220953 57 1221009
SCAFFOLD_342FS001221053 ATATTCTCTGTTTAGTGATTCTGTGGTAGTTCAGTTAGGGAGGGGAAGGAGAAA scaffold_342 1221053 54 1221106
SCAFFOLD_342FS001221153 AAGGGTTTTGTTCACTGTAAAGGGATGATCAAAATTATTAAAAATCCTAGGA scaffold_342 1221153 52 1221204
SCAFFOLD_342FS001221273 ATTTATGAAAGAAGAAAGGGTTGGGTGTAAAACACATGCAAACCATGTTGTTTGA scaffold_342 1221273 55 1221327

Total number of rows: 2160000

Table truncated, full table size 231303 Kbytes.




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Supplementary file Size Download File type/resource
GPL9781_2007-10-09_XT41_GV_ChIP_04_HX1.ndf.gz 126.5 Mb (ftp)(http) NDF
GPL9781_2007-10-09_XT41_GV_ChIP_04_HX1.pos.gz 17.0 Mb (ftp)(http) POS

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