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Platform GPL9780 Query DataSets for GPL9780
Status Public on Dec 17, 2009
Title NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 3
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Xenopus tropicalis
Manufacturer NimbleGen
Manufacture protocol According to manufacturer's protocol (Roche Nimblegen)
 
Description JGI 4.1 (UCSC xenTro2)
 
Submission date Dec 10, 2009
Last update date Dec 17, 2009
Contact name Gert Jan Veenstra
E-mail(s) g.veenstra@science.ru.nl
Phone +31 24 3610541
Organization name Radboud University
Department Molecular Developmental Biology
Street address Geert Grooteplein 28
City Nijmegen
ZIP/Postal code 6525 GA
Country Netherlands
 
Samples (1) GSM482777
Series (1)
GSE19413 ChIP-chip Designs to Interrogate the Xenopus Embryo Genome for Transcription Factor Binding and Epigenetic Regulation

Data table header descriptions
ID
SEQUENCE Sequence of oligo
Chromosome Chromosomal location
RANGE_START Chromosomal start position of oligo
LENGTH Oligo length
RANGE_END Chromosomal end position of oligo

Data table
ID SEQUENCE Chromosome RANGE_START LENGTH RANGE_END
SCAFFOLD_166FS001270369 CACTAAACTAGTTGAATGAAGGCCATGGACTTGTGGTCCAGTGTGAGTCA scaffold_166 1270369 50 1270418
SCAFFOLD_166FS001270469 AAAATACGATTCCCAGAATTTGGTCCACTAATATCTTGTCTTATGTGCCAAAGTT scaffold_166 1270469 55 1270523
SCAFFOLD_166FS001270569 GAGCATAACTTTCAGAAAATGCAGCCAACTGAACCACATGGGAGCCCTGC scaffold_166 1270569 50 1270618
SCAFFOLD_166FS001270669 GCTGCCGTGCCTTTGACTCACCACCAATTTTTTGCAATTTGCAATTGGCC scaffold_166 1270669 50 1270718
SCAFFOLD_166FS001270769 ATTACAGCAGTTATCTAGTTGCTAGGGTCTGAGTTACCTAAGTAACCAGGGA scaffold_166 1270769 52 1270820
SCAFFOLD_166FS001271024 GAAAAGTCGCTTAGGAATTATAACATATTAAAAGGTAACTTAAACCACCC scaffold_166 1271024 50 1271073
SCAFFOLD_166FS001271104 CATGGGCATGGCCTACACTCATCATCCTTCTGTATCCTAGTACATAATCT scaffold_166 1271104 50 1271153
SCAFFOLD_166FS001271224 TTTATATGGCTACTGGAACCAACTGGGTATGAGTAATGTGTTGCTCTAGAGCA scaffold_166 1271224 53 1271276
SCAFFOLD_166FS001271725 CATACGCGGCGCCACGGTTTGCTGAAGTTGCCGAAGTTTTCTCTCAAGGC scaffold_166 1271725 50 1271774
SCAFFOLD_166FS001271885 CCTGTGTCACGGCCCATAGATGTTACACTGTATAAGGCAAGAGGTCTTTC scaffold_166 1271885 50 1271934
SCAFFOLD_166FS001271985 ACCAAACACTGGAAAAAAGCTCACATGATGCATGGAAGCTGCACCTTGGA scaffold_166 1271985 50 1272034
SCAFFOLD_166FS001272085 CAGCTGCAATAAACCAGCTCTGGAAAATAAATTAAATTAGTTTAAAATGTATGTACA scaffold_166 1272085 57 1272141
SCAFFOLD_166FS001272185 CTTAACTGCTTTACCATTTAAGGAGAACTCTTATTTCTGCCTTATTGCACATGCAATAT scaffold_166 1272185 59 1272243
SCAFFOLD_166FS001272285 TTATAGCATTACTGTTATTCATCTGGCTTGCTTAAGATCCCTTAGCATTCATTTTTATTCT scaffold_166 1272285 61 1272345
SCAFFOLD_166FS001272385 ATATAGCAACCGCTCTATGTAATGTTTAAGTGCCCTAGTCTACTGCCAATTACTC scaffold_166 1272385 55 1272439
SCAFFOLD_166FS001272485 TCAGTATAATTCTTATCAGTTATTTCCAAAACTCAGATTACCTATTATGGGGTTATG scaffold_166 1272485 57 1272541
SCAFFOLD_166FS001272625 CATCTTATTATACTCATGCACATGCCATTGCCCACTATACCCTATAATCCTTTCTAACCAATC scaffold_166 1272625 63 1272687
SCAFFOLD_166FS001272725 CCCCCCACAAATACACTGTAGTGCAATGTCCTTCTGAACTCTACTTAGCC scaffold_166 1272725 50 1272774
SCAFFOLD_166FS001272805 CTCATCCTATTAATATGGCCCTCAAGCCAATTTTTACATGAAAAATGTTAATTGGCAT scaffold_166 1272805 58 1272862
SCAFFOLD_166FS001272965 TGTTTTGCGTCAAAAAAGATTTTTGAAAAGATTAGTGGAGTGGCGAAAAATT scaffold_166 1272965 52 1273016

Total number of rows: 2160000

Table truncated, full table size 233662 Kbytes.




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Supplementary file Size Download File type/resource
GPL9780_2007-10-09_XT41_GV_ChIP_03_HX1.ndf.gz 124.1 Mb (ftp)(http) NDF
GPL9780_2007-10-09_XT41_GV_ChIP_03_HX1.pos.gz 17.2 Mb (ftp)(http) POS

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