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Platform GPL9779 Query DataSets for GPL9779
Status Public on Dec 17, 2009
Title NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 2
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Xenopus tropicalis
Manufacturer NimbleGen
Manufacture protocol According to manufacturer's protocol (Roche Nimblegen)
 
Description JGI 4.1 (UCSC xenTro2)
 
Submission date Dec 10, 2009
Last update date Dec 17, 2009
Contact name Gert Jan Veenstra
E-mail(s) g.veenstra@science.ru.nl
Phone +31 24 3610541
Organization name Radboud University
Department Molecular Developmental Biology
Street address Geert Grooteplein 28
City Nijmegen
ZIP/Postal code 6525 GA
Country Netherlands
 
Samples (1) GSM482776
Series (1)
GSE19413 ChIP-chip Designs to Interrogate the Xenopus Embryo Genome for Transcription Factor Binding and Epigenetic Regulation

Data table header descriptions
ID
SEQUENCE Sequence of oligo
Chromosome Chromosomal location
RANGE_START Chromosomal start position of oligo
LENGTH Oligo length
RANGE_END Chromosomal end position of oligo

Data table
ID SEQUENCE Chromosome RANGE_START LENGTH RANGE_END
SCAFFOLD_100FS000000001 GCTTCTTTGCTGTGGTAATAGTGAAATCTTACTATTACGTCTCTGGGAGGTAGATTTG scaffold_100 1 58 58
SCAFFOLD_100FS001000091 AGTGGGGTGATATTAAGCTTTTTTTGCCCCCTGTCTACTAATTACTAAAGG scaffold_100 1000091 51 1000141
SCAFFOLD_100FS001000191 ATAAAACCCCATTTACCAAGCATTCCAGACAGTAGGTCCCATCCCAGGGC scaffold_100 1000191 50 1000240
SCAFFOLD_100FS001000291 TGCTTTAATAGCCATTTCCCACATTACATAATTAACAGATAATTGTAACTGATTAGCACAT scaffold_100 1000291 61 1000351
SCAFFOLD_100FS000010003 CAACAACGAAGTCAAGAACATATTGAAGATATGGAAATTAGAGCTACTGCTTAAAGGG scaffold_100 10003 58 10060
SCAFFOLD_100FS001000416 GGGGGTAAATTTAACCTTTCAAAGAAAAATAAAACCCTCCAGATACATCA scaffold_100 1000416 50 1000465
SCAFFOLD_100FS001000516 AAAAAGCCACAGAACACATAATAAACTCTAATCCCAACAGATAAGCAATTGTTAGT scaffold_100 1000516 56 1000571
SCAFFOLD_100FS001000616 AATTTCAGCCCTTTACTTTATTTATGACTGAGATAAAGATGATTCCCCTTCTGCACTCA scaffold_100 1000616 59 1000674
SCAFFOLD_100FS001000716 CAGTGCAATACATAATCTGGGTTTGTTTTCTTTTAATTATTGACATATATGCTTTGTAGA scaffold_100 1000716 60 1000775
SCAFFOLD_100FS001000836 CCTGACACATATACTTCAAGGTAAATTGTCATTGTTGCCTGCAGGAATACAATGCCATA scaffold_100 1000836 59 1000894
SCAFFOLD_100FS001000936 CCCTCCATTGTGATATCGCTTGCACAGGGAGCATACAATCTAGCGACTAA scaffold_100 1000936 50 1000985
SCAFFOLD_100FS001001036 GTGCTATTTGCGCTGCTTTGTGGTTACAATGTGTGTAGATACAGTAATTGGC scaffold_100 1001036 52 1001087
SCAFFOLD_100FS001001136 CAGGCTCTTCAGATAAGACAAAAACCAAAGCAAAGATAACGTTTCGGCCTATATC scaffold_100 1001136 55 1001190
SCAFFOLD_100FS001001236 CAGAAGTGAGTTAAAGCTACGAATTCTAACACAATATTTAAAAATAATAGACGCAG scaffold_100 1001236 56 1001291
SCAFFOLD_100FS001001376 ACAATAAATACAGTACAATAACTTCCATCGTTCAATCTGGACCTCAATTATCAGAGACG scaffold_100 1001376 59 1001434
SCAFFOLD_100FS001001456 TCAATCACTGCGACGTTTCGGCAGGTTTCAATCGATCTCATCTTCCTGTT scaffold_100 1001456 50 1001505
SCAFFOLD_100FS001001558 TGGTAAGTGAAAGAAGAGAGAGGTCTAAATTGGATTAAATGTCACTGGTTTTATT scaffold_100 1001558 55 1001612
SCAFFOLD_100FS001001658 GCAGCGGAATAAACGCAGAACTACACAGTCTGCTATTTGTTGTACAAATTGTTTGCAA scaffold_100 1001658 58 1001715
SCAFFOLD_100FS001001765 AAAGGGTTAGGACAAAACTAACAAATTAAAGGTGCCCTTTCACCTCCTGC scaffold_100 1001765 50 1001814
SCAFFOLD_100FS001001865 TGGAATCAAAGGCTGCTAATCCACATTTAGTCGCCTGAAAAAAAAAAGCAACTGATAA scaffold_100 1001865 58 1001922

Total number of rows: 2160000

Table truncated, full table size 233134 Kbytes.




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Supplementary file Size Download File type/resource
GPL9779_2007-10-09_XT41_GV_ChIP_02_HX1.ndf.gz 122.5 Mb (ftp)(http) NDF
GPL9779_2007-10-09_XT41_GV_ChIP_02_HX1.pos.gz 17.1 Mb (ftp)(http) POS

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