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Platform GPL9778 Query DataSets for GPL9778
Status Public on Dec 17, 2009
Title NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 1
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Xenopus tropicalis
Manufacturer NimbleGen
Manufacture protocol According to manufacturer's protocol (Roche Nimblegen)
 
Description JGI 4.1 (UCSC xenTro2)
 
Submission date Dec 10, 2009
Last update date Dec 17, 2009
Contact name Gert Jan Veenstra
E-mail(s) g.veenstra@science.ru.nl
Phone +31 24 3610541
Organization name Radboud University
Department Molecular Developmental Biology
Street address Geert Grooteplein 28
City Nijmegen
ZIP/Postal code 6525 GA
Country Netherlands
 
Samples (1) GSM482775
Series (1)
GSE19413 ChIP-chip Designs to Interrogate the Xenopus Embryo Genome for Transcription Factor Binding and Epigenetic Regulation

Data table header descriptions
ID
SEQUENCE Sequence of oligo
Chromosome Chromosomal location
RANGE_START Chromosomal start position of oligo
LENGTH Oligo length
RANGE_END Chromosomal end position of oligo

Data table
ID SEQUENCE Chromosome RANGE_START LENGTH RANGE_END
SCAFFOLD_10FS001000004 TCAGTACCACAAACCGCTTTAAACAGTCTGTCCTTTGGCGCCAATTTGCC scaffold_10 1000004 50 1000053
SCAFFOLD_10FS001000104 TGACAATCGCACCGGCGTCAGTACGCAGACTGACATCGCTACAGCAATGC scaffold_10 1000104 50 1000153
SCAFFOLD_10FS001000224 GGGACCAGGACAAAAGTATCCTTACACACTATGCCTAGGGTAGGCATAAT scaffold_10 1000224 50 1000273
SCAFFOLD_10FS001000324 TGCATACATTTTAGTTTGTCACTAAGGTAGACCAGGAGAATTAGTGGTGGCCT scaffold_10 1000324 53 1000376
SCAFFOLD_10FS001000404 TGAACACATGCTTCCCACTTTAGAAGCATTATTTTAAATGGAGATATCTGAAATTTGATAGA scaffold_10 1000404 62 1000465
SCAFFOLD_10FS000100044 CACCTGCACATATTTGTGCCAAGTGCCATTGTGCCAGCCTGTGGTGATGA scaffold_10 100044 50 100093
SCAFFOLD_10FS001000504 TGAGTATTTTAAATTCAGCATATTGACTGTTCTCGGATCCACACACTGTAGATGTGCCAACAAA scaffold_10 1000504 64 1000567
SCAFFOLD_10FS001000604 ATAAAATTACCAACATCCCACTAGACCCAGGGTCTTGTTTGCTAGGCTTTAAA scaffold_10 1000604 53 1000656
SCAFFOLD_10FS001000704 TGCATGGTTGCAAGCATTATCTGAACTTAACCTGATAAAAAAGACAATTTGTATAAATTGC scaffold_10 1000704 61 1000764
SCAFFOLD_10FS001000804 GTGACCATTTATACCTGAATAAATTATTTATTGCTGCTGTTATACTTTGTTTTCCT scaffold_10 1000804 56 1000859
SCAFFOLD_10FS001000924 ATGGTATAAAACCTTGATTGATTCAATTCCATGGGACGAACAACTGGCCGTTTAA scaffold_10 1000924 55 1000978
SCAFFOLD_10FS001001004 ATGGGATCCATAATGCACACAATCAAGAACAATGAATGTTGTGTAATACTGGAAATTCCTGCAG scaffold_10 1001004 64 1001067
SCAFFOLD_10FS001001124 GTTGGAAAATAGTCACCATTTATATGTACTGATACTGAATTCTAATACTAAACAGAAG scaffold_10 1001124 58 1001181
SCAFFOLD_10FS001001204 CCTAATGCAAGCATGATGATATGTACTCAATAGAATTGTTCTCTGTTTAAGTGCTAGCTAAATTG scaffold_10 1001204 65 1001268
SCAFFOLD_10FS001001304 CCATTTCCCAAGATACTCACTCTTTTTGGTATTGGTAGATATTGTGTAGCTCTACAAA scaffold_10 1001304 58 1001361
SCAFFOLD_10FS001001404 CTCTTCTGCATTAAATCTACCTCATAAAGAAAATGTCACCAATGTATCATGCAGTAATTTT scaffold_10 1001404 61 1001464
SCAFFOLD_10FS001001504 CTTCTTTGTCATGAAACATACACCTTAATGCCCCAAACTACTGTGAACCATTGGCTA scaffold_10 1001504 57 1001560
SCAFFOLD_10FS001001624 TTGACTGAGTGCAAGGGAAACACAAATCAAAATAATATCAACAGAGCAACACACATTCAAGT scaffold_10 1001624 62 1001685
SCAFFOLD_10FS001001724 TGAACAATGTATATCCTGGATCTCTCTAACTCTTACCTAACCATTACATTACTCTAAAGA scaffold_10 1001724 60 1001783
SCAFFOLD_10FS001001804 ACACCATTTTATGTCTTGCACTAGAATATTGTGCCTTGCCACCCTAGGCC scaffold_10 1001804 50 1001853

Total number of rows: 2160000

Table truncated, full table size 230769 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL9778_2007-10-09_XT41_GV_ChIP_01_HX1.ndf.gz 121.1 Mb (ftp)(http) NDF
GPL9778_2007-10-09_XT41_GV_ChIP_01_HX1.pos.gz 17.0 Mb (ftp)(http) POS

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