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Status
Public on Jan 19, 2010
Title
Affymetrix GeneChip Human Genome U133 Plus 2.0 Array [CDF: Hs133P_Hs_ENST, version 10]
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens Manufacturer
Affymetrix
Manufacture protocol
www.affymetrix.com
Description
CDF file was created by Microarray Lab at the Molecular and Behavioral Neuroscience Institute at the University of Michigan. Oligonucleotide probes on GeneChips were reorganized based on Ensembl Transcript Ids (Ensembl build: 46) was used as source. For the CDF file: A probe must hit only one genomic location; Probes that can be mapped to the same target sequence in the correct direction are grouped together in the same probe set; Each probe set must contain at least three oligonucleotide probes and probes in a set are ordered according to their location in the corresponding exon. For detailed description please see the paper and website.
Web link
http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/CDF_download_v10.asp Citation(s)
16284200 Submission date
Oct 26, 2009
Last update date
Jan 19, 2010
Contact name
Iain Gallagher
E-mail(s)
iaingallagher@gmail.com Phone
00 44 1786 46 6024
Organization name
University of Stirling
Department
Faculty of Health Sciences and Sport
Street address
Room 4B133 Cottrell Building, University of Stirling, Airthrey Road
City
Stirling
ZIP/Postal code
FK9 4LA
Country
United Kingdom
Samples (139)
GSM465274 , GSM465275 , GSM465276 , GSM465277 , GSM465278 , GSM465279
GSM465280 ,
GSM465281 ,
GSM465282 ,
GSM465283 ,
GSM465284 ,
GSM465285 ,
GSM465286 ,
GSM465287 ,
GSM465288 ,
GSM465289 ,
GSM465290 ,
GSM465291 ,
GSM465292 ,
GSM465293 ,
GSM465294 ,
GSM465295 ,
GSM465296 ,
GSM465297 ,
GSM465298 ,
GSM465299 ,
GSM465300 ,
GSM465301 ,
GSM465302 ,
GSM465303 ,
GSM465304 ,
GSM465305 ,
GSM465306 ,
GSM465307 ,
GSM465308 ,
GSM465309 ,
GSM465310 ,
GSM465311 ,
GSM465312 ,
GSM465313 ,
GSM465314 ,
GSM465315 ,
GSM465316 ,
GSM465317 ,
GSM465318 ,
GSM465319 ,
GSM465320 ,
GSM465321 ,
GSM465322 ,
GSM465323 ,
GSM465324 ,
GSM465325 ,
GSM465326 ,
GSM465327 ,
GSM465328 ,
GSM465329 ,
GSM465330 ,
GSM465331 ,
GSM465332 ,
GSM465333 ,
GSM465334 ,
GSM465335 ,
GSM465336 ,
GSM465337 ,
GSM465338 ,
GSM465339 ,
GSM465340 ,
GSM465341 ,
GSM465342 ,
GSM465343 ,
GSM465344 ,
GSM465345 ,
GSM465346 ,
GSM465347 ,
GSM465348 ,
GSM465349 ,
GSM465350 ,
GSM465351 ,
GSM465352 ,
GSM465353 ,
GSM465354 ,
GSM465355 ,
GSM465356 ,
GSM465357 ,
GSM465358 ,
GSM465359 ,
GSM465360 ,
GSM465361 ,
GSM465362 ,
GSM465363 ,
GSM465364 ,
GSM465365 ,
GSM465366 ,
GSM465367 ,
GSM465368 ,
GSM465369 ,
GSM465370 ,
GSM465371 ,
GSM465372 ,
GSM465373 ,
GSM465374 ,
GSM465375 ,
GSM465376 ,
GSM465377 ,
GSM465378 ,
GSM465379 ,
GSM465380 ,
GSM465381 ,
GSM465382 ,
GSM465383 ,
GSM465384 ,
GSM465385 ,
GSM465386 ,
GSM465387 ,
GSM465388 ,
GSM465389 ,
GSM465390 ,
GSM465391 ,
GSM466808 ,
GSM466809 ,
GSM466810 ,
GSM466811 ,
GSM466812 ,
GSM466813 ,
GSM466814 ,
GSM466815 ,
GSM466816 ,
GSM466817 ,
GSM466818 ,
GSM466819 ,
GSM466820 ,
GSM466821 ,
GSM466822 ,
GSM466823 ,
GSM466824 ,
GSM466825 ,
GSM466826 ,
GSM466827 ,
GSM466828 Series (2)
GSE18732 mRNA expression data from skeletal muscle of type 2 diabetes
GSE18832 mRNA profiling in rectus abdominis muscle from patients with upper GI cancer
Relations Alternative to
GPL570 (Alternative CDF [official])
Data table header descriptions ID CHR Chromosome
RANGE_GB GenBank Accession number
RANGE_START RANGE_END RANGE_STRAND SEQUENCE Description SPOT_ID
Data table ID CHR RANGE_GB RANGE_START RANGE_END RANGE_STRAND SEQUENCE Description SPOT_ID AFFX-BioB-3_at
ATATTACAACGCGGCAGCATTATGA
control
AFFX-BioB-5_at
GGCAGGATCGACGCGCTTCTGTATG
control
AFFX-BioB-M_at
ACGATGATGTCGATGCCTTTGATTT
control
AFFX-BioC-3_at
AGTTGCAGCGATTGCAACTGGCCTG
control
AFFX-BioC-5_at
ATTTATCCACGGCACTCCGCGAGCT
control
AFFX-BioDn-3_at
ATCCCCTGGCTTGCAGAAAATCCAG
control
AFFX-BioDn-5_at
ATGAGCGCCGGATTACGCGCGCTTG
control
AFFX-CreX-3_at
TAGTGAAACAGGGGCAATGGTGCGC
control
AFFX-CreX-5_at
TCAGGGTTAAAGATATCTCACGTAC
control
AFFX-DapX-3_at
GGTATATTGAAATCGTTGAAGCGAG
control
AFFX-DapX-5_at
AGCAGCAAGGACATCCGGATGAAAA
control
AFFX-DapX-M_at
CACAGTGATGATGTCGAGATCGGAA
control
AFFX-HSAC07/X00351_3_at
TTACCTGTACACTGACTTGAGACCA
control
AFFX-HSAC07/X00351_5_at
TGCCATCCTGCGTCTGGACCTGGCT
control
AFFX-HSAC07/X00351_M_at
GTCCACCGCAAATGCTTCTAGGCGG
control
AFFX-hum_alu_at
AGCCTGGGCGACAGAGCGAGACTCC
control
AFFX-HUMGAPDH/M33197_3_at
TGTCATGTACCATCAATAAAGTACC
control
AFFX-HUMGAPDH/M33197_5_at
CTTCACCACCATGGAGAAGGCTGGG
control
AFFX-HUMGAPDH/M33197_M_at
GAAAAACCTGCCAAATATGATGACA
control
AFFX-HUMISGF3A/M97935_3_at
GAGGCCTCCTCTCTCAGTTTTTATA
control
27004 5315 Kbytes .Supplementary file Size Download File type/resource GPL9486_Hs133P_Hs_ENST.cdf.gz
14.6 Mb
(ftp) (http) CDF
GPL9486_Hs133P_Hs_ENST.psi.gz
201.2 Kb
(ftp) (http) PSI
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