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Platform GPL9182 Query DataSets for GPL9182
Status Public on Sep 10, 2010
Title NimbleGen_Magnaporthe grisea_38K_NC/ChIP_080229
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Pyricularia grisea
Manufacturer NimbleGen
Manufacture protocol see manufacturer's web site www.nimblegen.com
 
Description ChIP chip design for Magnaporthe grisea 5 (rice blast) non-codding regions. Sequences from the Broad Institute. 42bp interval.
 
Submission date Sep 11, 2009
Last update date Sep 10, 2010
Contact name Soonok Kim
E-mail(s) kim.2527@osu.edu
Phone 614-247-0012
Fax 614-292-4455
Organization name The Ohio State University
Department Plant Pathology
Street address 2021 Coffey Rd.
City Columbus
State/province OH
ZIP/Postal code 43210
Country USA
 
Samples (3) GSM451996, GSM451997, GSM451998
Series (2)
GSE18080 ChIP-chip of MoCRZ1
GSE18193 ChIP-chip and gene expression model of the MoCRZ1 mediated circuit for Ca2+/calcineurin signaling in rice blast fungus

Data table header descriptions
ID
SEQUENCE Sequence of oligo
SEQ_ID SuperContig of Magnaporthe grisea 5
RANGE_GB GenBank Accession number
RANGE_START Start position of oligo
LENGTH Oligo length
RANGE_END End position of oligo

Data table
ID SEQUENCE SEQ_ID RANGE_GB RANGE_START LENGTH RANGE_END
MG5_SC100FS000000398 GTGGGCGAGGGCACAAACCATAATTAAGCCACTAGGGTGACAGGCATTAA MG5_SC100:1-5246 DS231554 398 50 447
MG5_SC100FS000000433 GGTGACAGGCATTAATATTTACTTACCCCTGCATACGGAATACCATCCGG MG5_SC100:1-5246 DS231554 433 50 482
MG5_SC100FS000000483 TTCTCCGTCAAGCTATGCCTCATCCAATGCCAATCGGCAGCGGCAGTATT MG5_SC100:1-5246 DS231554 483 50 532
MG5_SC100FS000000527 AGTATTTACTGCTTCGGTCACTTCACATAAAAGTCGGGCGCACGCCACTT MG5_SC100:1-5246 DS231554 527 50 576
MG5_SC100FS000000566 GCACGCCACTTGAAATTGCAATCGGCTTCGAAACAGGCCTATTTGATTTTT MG5_SC100:1-5246 DS231554 566 51 616
MG5_SC100FS000000907 ATGCGGTGTAGGTTGACAAAAGGAGGTCATGCAGTGTTCAGGGATATTTT MG5_SC100:1-5246 DS231554 907 50 956
MG5_SC100FS000001033 TTTAACGCAATTCATACCCCAGCGCCGTAATACCTTCCACAGGAATTCAA MG5_SC100:1-5246 DS231554 1033 50 1082
MG5_SC100FS000001076 AATTCAACCCTTGCACAGCCGTGTTGGCAAACCATGACAAACAAAGGCAA MG5_SC100:1-5246 DS231554 1076 50 1125
MG5_SC100FS000001124 AACCACCAACGATCTAATCTGGCCCGAGCGGCTTCAGGACCCGGTCTTGA MG5_SC100:1-5246 DS231554 1124 50 1173
MG5_SC100FS000001172 GACTCTCGCGGCTGATTGGTCCCAAAAAGATCCCAGGAAGAGGCCGGACG MG5_SC100:1-5246 DS231554 1172 50 1221
MG5_SC100FS000001212 AGGCCGGACGCGTTCCCGAGTGTTTGTGCTCGGCCTCCCCGAGATTATAT MG5_SC100:1-5246 DS231554 1212 50 1261
MG5_SC100FS000001251 CGAGATTATATTGCCGTTTCTGGTTTCTTTCATGTAGAGAGTGCGAGCCAA MG5_SC100:1-5246 DS231554 1251 51 1301
MG5_SC100FS000001294 CGAGCCAAGAATGAAATTTCTGCTTTCAGTTATGATTCCCAATAGTTTGGGCG MG5_SC100:1-5246 DS231554 1294 53 1346
MG5_SC100FS000001344 GCGCAGTCTTTGGAGAGGTTGACTCATTTAGCGCATTTCTTTTTGGTTGC MG5_SC100:1-5246 DS231554 1344 50 1393
MG5_SC100FS000001377 CATTTCTTTTTGGTTGCCTGGTTCTTGGAATAATGTTCAAGAATTGGAAAATT MG5_SC100:1-5246 DS231554 1377 53 1429
MG5_SC100FS000002411 GCTGGATAGTTAACAAATTAGATCTGGATTAATATGATATATCTACCTCTTTATTGCAATGG MG5_SC100:1-5246 DS231554 2411 62 2472
MG5_SC100FS000002456 CCTCTTTATTGCAATGGTATCCAGTAAAAGTCATCCGCTATCTGCGAAGC MG5_SC100:1-5246 DS231554 2456 50 2505
MG5_SC100FS000002505 CCTGCTTGCCCTGTATTCTTGCCATCCGCAATTTACTAAACAGTCTCTAG MG5_SC100:1-5246 DS231554 2505 50 2554
MG5_SC100FS000002544 ACAGTCTCTAGTCAAGTCAAATCGTCAGATAATAGCTGTTCGAACAATGAGTTGGAC MG5_SC100:1-5246 DS231554 2544 57 2600
MG5_SC100FS000002591 TGAGTTGGACGTTGTCCTAGTCTCCATGTATTATACAAATTCTGTCCGAGG MG5_SC100:1-5246 DS231554 2591 51 2641

Total number of rows: 383036

Table truncated, full table size 38862 Kbytes.




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Supplementary data files not provided
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