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Status
Public on Jun 05, 2009
Title
080922_modEncode_Caenorhabditis elegans_2M tiling chip_HX1
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Caenorhabditis elegans Manufacturer
Nimblegen Systems Inc
Manufacture protocol
Singh-Gasson S, Green RD, Yue Y, Nelson C, Blattner F, Sussman MR,Cerrina F. Maskless fabrication of light-directed oligonucleotide microarrays using a digital micromirror array. Nat Biotechnol. 1999 Oct;17(10):974-8. PMID: 10504697
Catalog number
080922_modEncode_CE_chip_HX1
Support
glass
Coating
aminosilane
Description
Native NimbleGen files (ndf, pos) are linked below as supplementary files.
Web link
http://www.nimblegen.com/products/chip/index.html Contributor(s)
Lieb J Submission date
Jun 04, 2009
Last update date
Aug 17, 2012
Contact name
Everett Zhou
E-mail(s)
xlzhou@email.unc.edu Organization name
UNC
Street address
1000 Manning Dr.
City
Chapel Hill
State/province
NC
ZIP/Postal code
27599
Country
USA
Samples (244)
GSM417043 , GSM417044 , GSM417045 , GSM562685 , GSM562686 , GSM562687
GSM562688 ,
GSM562691 ,
GSM562693 ,
GSM562694 ,
GSM562706 ,
GSM562707 ,
GSM562708 ,
GSM562711 ,
GSM562712 ,
GSM562713 ,
GSM562714 ,
GSM562715 ,
GSM562716 ,
GSM562717 ,
GSM562718 ,
GSM562719 ,
GSM562720 ,
GSM562721 ,
GSM562722 ,
GSM562723 ,
GSM562724 ,
GSM562725 ,
GSM562726 ,
GSM562727 ,
GSM562728 ,
GSM562729 ,
GSM562730 ,
GSM562731 ,
GSM562732 ,
GSM562733 ,
GSM562734 ,
GSM562735 ,
GSM562736 ,
GSM562737 ,
GSM562738 ,
GSM562739 ,
GSM562740 ,
GSM562741 ,
GSM562742 ,
GSM562743 ,
GSM562744 ,
GSM562745 ,
GSM562746 ,
GSM562747 ,
GSM562748 ,
GSM562749 ,
GSM562750 ,
GSM562751 ,
GSM562752 ,
GSM562753 ,
GSM562754 ,
GSM562755 ,
GSM562756 ,
GSM562757 ,
GSM562758 ,
GSM562759 ,
GSM562769 ,
GSM562770 ,
GSM562771 ,
GSM562772 ,
GSM562773 ,
GSM562774 ,
GSM562775 ,
GSM562776 ,
GSM562777 ,
GSM562778 ,
GSM562779 ,
GSM562780 ,
GSM562781 ,
GSM562782 ,
GSM562783 ,
GSM562784 ,
GSM562785 ,
GSM562786 ,
GSM562787 ,
GSM562788 ,
GSM562789 ,
GSM562790 ,
GSM562791 ,
GSM562792 ,
GSM562793 ,
GSM562794 ,
GSM562795 ,
GSM562796 ,
GSM562797 ,
GSM562798 ,
GSM562799 ,
GSM624426 ,
GSM624427 ,
GSM624428 ,
GSM624429 ,
GSM624430 ,
GSM624431 ,
GSM624432 ,
GSM624433 ,
GSM624434 ,
GSM624435 ,
GSM624436 ,
GSM624437 ,
GSM624438 ,
GSM624439 ,
GSM644511 ,
GSM644512 ,
GSM644513 ,
GSM644514 ,
GSM644515 ,
GSM644516 ,
GSM644517 ,
GSM644518 ,
GSM646547 ,
GSM646548 ,
GSM646549 ,
GSM646550 ,
GSM646551 ,
GSM646552 ,
GSM646553 ,
GSM646554 ,
GSM646555 ,
GSM646556 ,
GSM656310 ,
GSM656311 ,
GSM656312 ,
GSM656313 ,
GSM656314 ,
GSM656315 ,
GSM686470 ,
GSM686471 ,
GSM686472 ,
GSM686614 ,
GSM686615 ,
GSM686616 ,
GSM686617 ,
GSM686618 ,
GSM686619 ,
GSM686620 ,
GSM686621 ,
GSM686622 ,
GSM686623 ,
GSM763967 ,
GSM811253 ,
GSM811254 ,
GSM811255 ,
GSM811256 ,
GSM811259 ,
GSM811260 ,
GSM811261 ,
GSM811262 ,
GSM811267 ,
GSM811268 ,
GSM811269 ,
GSM811270 ,
GSM811271 ,
GSM811272 ,
GSM811273 ,
GSM811274 ,
GSM811275 ,
GSM811276 ,
GSM811277 ,
GSM811278 ,
GSM811279 ,
GSM811280 ,
GSM811281 ,
GSM811282 ,
GSM811283 ,
GSM811284 ,
GSM811285 ,
GSM811286 ,
GSM811287 ,
GSM811288 ,
GSM811289 ,
GSM811290 ,
GSM811291 ,
GSM811292 ,
GSM811293 ,
GSM811294 ,
GSM811295 ,
GSM811296 ,
GSM811297 ,
GSM811298 ,
GSM811299 ,
GSM811300 ,
GSM864789 ,
GSM864790 ,
GSM864791 ,
GSM864792 ,
GSM864793 ,
GSM864794 ,
GSM938393 ,
GSM938394 ,
GSM938395 ,
GSM938396 ,
GSM938397 ,
GSM938398 ,
GSM938399 ,
GSM938400 ,
GSM938401 ,
GSM938402 ,
GSM938403 ,
GSM938404 ,
GSM938405 ,
GSM994490 ,
GSM994491 ,
GSM994492 ,
GSM994493 ,
GSM994494 ,
GSM994495 ,
GSM996944 ,
GSM996945 ,
GSM996946 ,
GSM996947 ,
GSM996948 ,
GSM996949 ,
GSM996950 ,
GSM1005484 ,
GSM1005485 ,
GSM1005486 ,
GSM1005487 ,
GSM1047314 ,
GSM1047315 ,
GSM1047316 ,
GSM1047317 ,
GSM1047318 ,
GSM1047319 ,
GSM1047320 ,
GSM1255285 ,
GSM1255286 ,
GSM1255287 ,
GSM1255288 ,
GSM1255289 ,
GSM1255290 ,
GSM1255291 ,
GSM1255292 ,
GSM1419164 ,
GSM1419165 ,
GSM1419166 ,
GSM1419167 ,
GSM1419168 ,
GSM1419169 Series (126)
GSE16621 Analysis of SDC-2, DPY-26, MIX-1, DPY-27 and RNA Polymerase II ChIP-chip and RNA abundance in C. elegans
GSE22708 JL00012_DPY28_N2_MXEMB
GSE22709 SDQ3146_SDC2_N2_MXEMB
GSE22710 Strome ABAB817_8WG16_N2_EEMB
GSE22711 Strome UP07442_H3K9ME3_N2_EEMB
GSE22716 Strome SDQ0790_MRG1_N2_EEMB
GSE22717 Strome HK00012_H3K36ME22C3_N2_EEMB
GSE22718 Strome SDQ0791_MES4_N2_EEMB
GSE22719 Strome HK00001_H3K36ME313C9_N2_EEMB
GSE22720 Strome HK00009_H3K9ME32F3_N2_EEMB
GSE22721 Strome WA30534819_H3K4ME3_N2_EEMB
GSE22722 Strome AR0144_H3144_N2_EEMB
GSE22723 Strome AB1791_H3609253_N2_EEMB
GSE22724 Strome AB9049_H3K36ME2608457_N2_EEMB
GSE22725 Strome AB8898_H3K9ME3339901_N2_EEMB
GSE22726 Strome NA_N2_EEMB
GSE22727 Strome SS00050_IGG_N2_EEMB
GSE22728 Ahringer HK00009_H3K9ME32F3_N2_L3
GSE22729 Ahringer HK00012_H3K36ME22C3_N2_L3
GSE22730 Ahringer HK00013_H3K27ME31E7_N2_L3
GSE22731 Ahringer HK00001_H3K36ME313C9_N2_L3
GSE22732 Ahringer WA30834809_H3K4ME2_N2_L3
GSE22733 Ahringer HK00008_H3K9ME26D11_N2_L3
GSE22734 Ahringer AR0144_H3144_N2_L3
GSE22735 Ahringer AR0144_H3144_N2_L3_LM
GSE22736 Ahringer AB1791_H3_N2_L3
GSE22737 Strome AB2886_H3K79ME1361912_N2_EEMB
GSE22738 Strome AB3594_H3K79ME2346021_N2_EEMB
GSE22739 Lieb AB2621_H3K79ME3361576_N2_EEMB
GSE22740 Strome HK00008_H3K9ME26D11_N2_EEMB
GSE22741 Strome WA30834809_H3K4ME2_N2_EEMB
GSE22742 Desai OD00079_HCP3_N2_MXEMB
GSE22743 Strome OD00079_HCP3_N2_EEMB
GSE22744 Strome AB9048_H3K36ME1206009_N2_EEMB
GSE22745 Strome MP07030_H3K4ME2DAM1570816_N2_EEMB
GSE22746 Strome AB9045_H3K9ME1291918_N2_EEMB
GSE22747 Strome AB8895_H3K4ME1733246_N2_EEMB
GSE22748 Strome WA30634849_H3K27AC_N2_EEMB
GSE22749 Strome AB4441_H3K9AC_N2_EEMB
GSE22750 Strome SDQ3891_LEM2_N2_MXEMB
GSE22751 Strome SDQ3897_NPP13_N2_MXEMB
GSE22752 Strome AB8896_H3K9ME1104560_N2_EEMB
GSE22753 Strome AB4729_H3K27AC361571_N2_EEMB
GSE22754 Strome AB9051_H4K20ME1104513_N2_EEMB
GSE22755 Strome LPAR109_H4TETRAAC109_N2_EEMB
GSE22756 Strome SDQ3582_CBP1_N2_MXEMB
GSE25352 Ahringer MP05858_H4DAM1636076_N2_L3
GSE25353 Ahringer AB9045_H3K9ME1291918_N2_L3
GSE25354 Ahringer AB4729_H3K27AC361571_N2_L3
GSE25355 Ahringer WA30634849_H3K27AC_N2_L3
GSE25356 Ahringer AB15823_H4K8AC487128_N2_L3
GSE25357 Ahringer AB8895_H3K4ME1733246_N2_L3
GSE25358 Ahringer AB9051_H4K20ME1104513_N2_L3
GSE25933 Caenorhabditis elegans chromosome arms are anchored to the nuclear membrane via discontinuous association with LEM-2
GSE26178 Strome UP07448_H3K27ME124439_N2_EEMB
GSE26179 Ahringer UP07448_H3K27ME124439_N2_L3
GSE26180 Strome HK00013_H3K27ME31E7_N2_EEMB
GSE26181 Ahringer AB9048_H3K36ME1206009_N2_L3
GSE26182 Lieb AB3594_H3K79ME2346021_N2_L3
GSE26183 Lieb AB2621_H3K79ME3_361576_N2_L3
GSE26184 Strome AB15823_H4K8AC487128_N2_EEMB
GSE26185 Strome MP07329_H4K16ACDAM1612187_N2_EEMB
GSE26186 Broad chromosomal domains of histone modification patterns in C. elegans
GSE26200 Lieb AB46540_NIGG_N2_MXEMB
GSE26202 Lieb SDQ4051_LEM2_SP646_MXEMB_SP646
GSE26203 Lieb SDQ3891_LEM2_VC1317_MXEMB
GSE26204 Lieb SDQ4051_LEM2_N2_MXEMB
GSE26327 Lieb AB2886_H3K79ME1361912_N2_MXEMB
GSE27727 Lieb JL00006_ZFP1_N2_MXEMB
GSE27778 Lieb AB2621_H3K79ME3361576_N2_MXEMB
GSE27779 Strome DISN147_H4K20ME1001_N2_LTEMB
GSE27780 Lieb AB3594_H3K79ME2346021_N2_MXEMB
GSE27781 Lieb AB2886_H3K79ME1_361912_N2_L3
GSE27782 Lieb JL00006_ZFP1_RB774_MXEMB
GSE27783 Lieb SDQ3891_LEM2_SP646_MXEMB
GSE30789 Strome WA30534819_H3K4ME3_N2_L3_s5
GSE35079 Strome Pol II, H3K36me3 and CENP-A in met-1 EEMB
GSE37488 Lieb SDQ4129_Y39G10AR18_N2_MXEMB
GSE37489 Strome TJ00001_H3K27ME18835_N2_EEMB
GSE37490 StromeWA30834809_H3K4ME2_N2_EEMB
GSE37491 Strome MP07030_H3K4ME2_DAM1570816_N2_EEMB
GSE37492 Lieb SDQ2357_AMA1_N2_MXEMB_1
GSE37493 Strome DISN147_H4K20ME1_001_N2_EEMB
GSE37494 Strome JL00001_DPY27_N2_EEMB
GSE37495 Strome SDQ2324_HPL2_N2_LTEMB
GSE37496 Strome SDQ2330_LIN15B_N2_LTEMB
GSE37497 Ahringer DISN147_H4K20ME1_001_N2_L3
GSE37498 Desai ABAB817_8WG16_N2_EEMB
GSE37499 Desai ABAB817_8WG16_N2_LTEMB
GSE37500 Strome WA30534819_H3K4ME3_N2_EEMB_s1
GSE37501 Strome WA30534819_H3K4ME3_N2_LTEMB_s2
GSE37502 Strome WA30534819_H3K4ME3_N2_L1_s3
GSE37503 Strome WA30534819_H3K4ME3_N2_L2_s4
GSE37504 Strome WA30534819_H3K4ME3_N2_L4_s6
GSE37505 Strome WA30534819_H3K4ME3_N2_YA_s7
GSE37506 Strome HK00001_H3K36ME3_13C9_N2_EEMB_s1
GSE37507 Strome HK00001_H3K36ME3_13C9_N2_LTEMB_s2
GSE37508 Strome HK00001_H3K36ME3_13C9_N2_L1_s3
GSE37509 Strome HK00001_H3K36ME3_13C9_N2_L2_s4
GSE37510 Strome HK00001_H3K36ME3_13C9_N2_L3_s5
GSE37511 Strome HK00001_H3K36ME3_13C9_N2_L4_s6
GSE37512 Strome HK00001_H3K36ME3_13C9_N2_YA_s7
GSE37513 Lieb SDQ3517_ZFP1_N2_MXEMB
GSE38159 Strome MES-4, H3K36me3 and H3K27me3 in mes-4 RNAi EEMB
GSE38160 Transcript and chromatin analysis in mes-2, mes-4, and mes-2; mes-4 double mutants
GSE38180 Strome Mes-4, H3K36me3 and H3K27me3 in N2 EEMB
GSE40459 Expression analysis of Caenorhabditis elegans Bristol N2 rsd-2 and rsd-6 single mutants at 25°C and 20°C
GSE40460 RSD-2 and RSD-6 promote germ cell immortality by repressing spermatogenesis and repeat loci via small interfering RNAs
GSE40569 Expression analysis of Caenorhabditis elegans Bristol N2 prg-1 and Bristol N2 prg-1; daf-2 double mutant
GSE40573 Reduced insulin/IGF-1-like signaling restores germ cell immortality in Caenorhabditis elegans Piwi mutants
GSE40946 Ahringer AB1791_H3_N2_L3
GSE40947 Ahringer FP00001_HPL2_N2_L3_EGS
GSE42651 Integral nuclear pore proteins bind to Pol III genes and are required for Pol III transcript processing in C. elegans [array]
GSE42741 Chromatin Immunoprecipitation of Nuclear Pore Proteins in C. elegans
GSE49902 Chromatin organization in NPP-13 knockdown C. elegans embryos [array]
GSE50488 Chromatin organization in NPP-13 knockdown C. elegans embryos
GSE51916 Desai OD00079_HCP3_N2_EEMB
GSE51917 Desai OD00079_HCP3_N2_LTEMB
GSE51918 Desai SDQ0804_HCP3_N2_LTEMB
GSE51919 Desai SDQ0803_KNL2_N2_LTemb
GSE51920 Desai SDQ0810_KNL2_N2_LTemb
GSE58761 HPL-2 in GW638 (met-2 set-25) MxEmb
GSE58762 HPL-2 in N2 (wild-type) early embryo
GSE58763 HPL-2 in PFR40 (hpl-2) early embryo
GSE58764 HP1 in C. elegans
GSE126884 Repression of germline genes in C. elegans somatic tissues by H3K9 dimethylation of their promoters
Data table header descriptions ID CHROMOSOME Chromosome name
RANGE_GB ACCESSION.VERSION corresponding to CHROMOSOME
RANGE_START Start coordinate. wormbase ws170/ UCSC ce4
RANGE_END Stop coordinate. wormbase ws170/ UCSC ce4
RANGE_STRAND Positive or negative
PROBE_CLASS Experimental or control
SEQUENCE Probe sequence
GENOME RELEASE The genome release coordinates correspond to.
Data table ID CHROMOSOME RANGE_GB RANGE_START RANGE_END RANGE_STRAND PROBE_CLASS SEQUENCE GENOME RELEASE IIFS009643305
II
NC_003280.6 9643305
9643354
+
experimental
TTTCATGAACTCCAGTGCACTGGAATAAATGTTATTTTTTGATAAATCAG
ws170/ce4
IFS002267389
I
NC_003279.5 2267389
2267438
+
experimental
TGAAGGAGATAAGGAGAAAGAGGGGCATGAACAGTGCCACGTTGAATCTG
ws170/ce4
IVFS000378649
IV
NC_003282.4 378649
378698
+
experimental
ACGTCAGTGGCCGAACTTCAATCAATAATGAAAATAACTATGGAAAGAGA
ws170/ce4
IIIFS004487259
III
NC_003281.7 4487259
4487308
+
experimental
CAGCAAAATATGGCAGACTTGTAGGCTTGAAAACGTGCCTACTTGACATT
ws170/ce4
IIIFS006450746
III
NC_003281.7 6450746
6450795
+
experimental
TTTATGGATTTTAATTGTTTTCAAAATGAAAAATTGAGATTTGCACGCTG
ws170/ce4
IIIFS011038838
III
NC_003281.7 11038838
11038887
+
experimental
ACCAAAGTAACGAAATTTTCAGTTTGTGTTATGCTCGAAAAAAGATTTTC
ws170/ce4
XFS016534025
X
NC_003284.6 16534025
16534074
+
experimental
TTGCGACAACACCGTTCGTGAGGTTCGATCGAATAAGACGGCGCACTAAC
ws170/ce4
IVFS005377106
IV
NC_003282.4 5377106
5377155
+
experimental
TCTGGAATTTTGAAATTGAACGGTTTTATAGTTTTTTAGATGGAATCGCG
ws170/ce4
IIIFS003564311
III
NC_003281.7 3564311
3564360
+
experimental
CAGGAAGTGGTCGGAATCGAGTGGGGGCACGTGTGACTTCCAAAAAACTG
ws170/ce4
XFS017214706
X
NC_003284.6 17214706
17214755
+
experimental
AAGTATATTCAACTTACCAAAAGAAATTTGACGAGATTGAGTGGCAATGA
ws170/ce4
IFS014538350
I
NC_003279.5 14538350
14538399
+
experimental
CAATTTGCCGATTTGCCGGAAATTTCCATGTCGACAATTTGCCGGAAATT
ws170/ce4
XFS011841267
X
NC_003284.6 11841267
11841316
+
experimental
ATTACTCTTTTCTCCTTGTTTTGAAAAAAACTCTAGTTGTGAAAGCTCTT
ws170/ce4
IFS009851651
I
NC_003279.5 9851651
9851700
+
experimental
AAGGCTCCGGTCGCGATTTCACCACTGCTGACGGCCAACTCTCCGGCTTC
ws170/ce4
IIIFS000455415
III
NC_003281.7 455415
455464
+
experimental
CTTTTAAGTTGCTGAGACAAGAGAGTGTGTCGGGGAGGGAGACGTAGATG
ws170/ce4
XFS005259821
X
NC_003284.6 5259821
5259870
+
experimental
TTCAATTAATGCAATCCAGAAAACATTGACACCATCTTCCCCGGAAGATG
ws170/ce4
IIIFS001170491
III
NC_003281.7 1170491
1170540
+
experimental
ATCGCACAACGGGAAGCTTGGAGTGCACGGTGGTGGTTAGCGATGGGGAG
ws170/ce4
IIIFS004983266
III
NC_003281.7 4983266
4983315
+
experimental
CAGAGAGATGACATCCACACTTTTTTTTCGTTTTGCATAATCGTTTATAG
ws170/ce4
IIFS005506476
II
NC_003280.6 5506476
5506525
+
experimental
AATGGTTTGTAATTAAAAAATCTATGAAAATAATAAAATTTTTAAGGCGA
ws170/ce4
VFS004923838
V
NC_003283.7 4923838
4923887
+
experimental
GTTTCAAGAAGAACACAAAGCAACATTTCTGAAACAAGATCCTTCTGCTC
ws170/ce4
XFS013749840
X
NC_003284.6 13749840
13749889
+
experimental
CAGCTAAAAGCACCCGAAAGGGGTCACGAATCACCAAAATACCACTTAAC
ws170/ce4
2142000 246279 Kbytes .Supplementary file Size Download File type/resource GPL8647_080922_modEncode_CE_chip_HX1.ndf.gz
87.5 Mb
(ftp) (http) NDF
GPL8647_080922_modEncode_CE_chip_HX1.pos.gz
20.4 Mb
(ftp) (http) POS
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