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Platform GPL8647 Query DataSets for GPL8647
Status Public on Jun 05, 2009
Title 080922_modEncode_Caenorhabditis elegans_2M tiling chip_HX1
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Caenorhabditis elegans
Manufacturer Nimblegen Systems Inc
Manufacture protocol Singh-Gasson S, Green RD, Yue Y, Nelson C, Blattner F, Sussman MR,Cerrina F. Maskless fabrication of light-directed oligonucleotide microarrays using a digital micromirror array. Nat Biotechnol. 1999 Oct;17(10):974-8. PMID: 10504697
Catalog number 080922_modEncode_CE_chip_HX1
Support glass
Coating aminosilane
Description Native NimbleGen files (ndf, pos) are linked below as supplementary files.
Web link
Contributor(s) Lieb J
Submission date Jun 04, 2009
Last update date Aug 17, 2012
Contact name Everett Zhou
Organization name UNC
Street address 1000 Manning Dr.
City Chapel Hill
State/province NC
ZIP/Postal code 27599
Country USA
Samples (244) GSM417043, GSM417044, GSM417045, GSM562685, GSM562686, GSM562687 
Series (126)
GSE16621 Analysis of SDC-2, DPY-26, MIX-1, DPY-27 and RNA Polymerase II ChIP-chip and RNA abundance in C. elegans
GSE22708 JL00012_DPY28_N2_MXEMB
GSE22709 SDQ3146_SDC2_N2_MXEMB

Data table header descriptions
CHROMOSOME Chromosome name
RANGE_START Start coordinate. wormbase ws170/ UCSC ce4
RANGE_END Stop coordinate. wormbase ws170/ UCSC ce4
RANGE_STRAND Positive or negative
PROBE_CLASS Experimental or control
SEQUENCE Probe sequence
GENOME RELEASE The genome release coordinates correspond to.

Data table
IIFS009643305 II NC_003280.6 9643305 9643354 + experimental TTTCATGAACTCCAGTGCACTGGAATAAATGTTATTTTTTGATAAATCAG ws170/ce4
IFS002267389 I NC_003279.5 2267389 2267438 + experimental TGAAGGAGATAAGGAGAAAGAGGGGCATGAACAGTGCCACGTTGAATCTG ws170/ce4
IVFS000378649 IV NC_003282.4 378649 378698 + experimental ACGTCAGTGGCCGAACTTCAATCAATAATGAAAATAACTATGGAAAGAGA ws170/ce4
IIIFS004487259 III NC_003281.7 4487259 4487308 + experimental CAGCAAAATATGGCAGACTTGTAGGCTTGAAAACGTGCCTACTTGACATT ws170/ce4
IIIFS006450746 III NC_003281.7 6450746 6450795 + experimental TTTATGGATTTTAATTGTTTTCAAAATGAAAAATTGAGATTTGCACGCTG ws170/ce4
IIIFS011038838 III NC_003281.7 11038838 11038887 + experimental ACCAAAGTAACGAAATTTTCAGTTTGTGTTATGCTCGAAAAAAGATTTTC ws170/ce4
XFS016534025 X NC_003284.6 16534025 16534074 + experimental TTGCGACAACACCGTTCGTGAGGTTCGATCGAATAAGACGGCGCACTAAC ws170/ce4
IVFS005377106 IV NC_003282.4 5377106 5377155 + experimental TCTGGAATTTTGAAATTGAACGGTTTTATAGTTTTTTAGATGGAATCGCG ws170/ce4
IIIFS003564311 III NC_003281.7 3564311 3564360 + experimental CAGGAAGTGGTCGGAATCGAGTGGGGGCACGTGTGACTTCCAAAAAACTG ws170/ce4
XFS017214706 X NC_003284.6 17214706 17214755 + experimental AAGTATATTCAACTTACCAAAAGAAATTTGACGAGATTGAGTGGCAATGA ws170/ce4
IFS014538350 I NC_003279.5 14538350 14538399 + experimental CAATTTGCCGATTTGCCGGAAATTTCCATGTCGACAATTTGCCGGAAATT ws170/ce4
XFS011841267 X NC_003284.6 11841267 11841316 + experimental ATTACTCTTTTCTCCTTGTTTTGAAAAAAACTCTAGTTGTGAAAGCTCTT ws170/ce4
IFS009851651 I NC_003279.5 9851651 9851700 + experimental AAGGCTCCGGTCGCGATTTCACCACTGCTGACGGCCAACTCTCCGGCTTC ws170/ce4
IIIFS000455415 III NC_003281.7 455415 455464 + experimental CTTTTAAGTTGCTGAGACAAGAGAGTGTGTCGGGGAGGGAGACGTAGATG ws170/ce4
XFS005259821 X NC_003284.6 5259821 5259870 + experimental TTCAATTAATGCAATCCAGAAAACATTGACACCATCTTCCCCGGAAGATG ws170/ce4
IIIFS001170491 III NC_003281.7 1170491 1170540 + experimental ATCGCACAACGGGAAGCTTGGAGTGCACGGTGGTGGTTAGCGATGGGGAG ws170/ce4
IIIFS004983266 III NC_003281.7 4983266 4983315 + experimental CAGAGAGATGACATCCACACTTTTTTTTCGTTTTGCATAATCGTTTATAG ws170/ce4
IIFS005506476 II NC_003280.6 5506476 5506525 + experimental AATGGTTTGTAATTAAAAAATCTATGAAAATAATAAAATTTTTAAGGCGA ws170/ce4
VFS004923838 V NC_003283.7 4923838 4923887 + experimental GTTTCAAGAAGAACACAAAGCAACATTTCTGAAACAAGATCCTTCTGCTC ws170/ce4
XFS013749840 X NC_003284.6 13749840 13749889 + experimental CAGCTAAAAGCACCCGAAAGGGGTCACGAATCACCAAAATACCACTTAAC ws170/ce4

Total number of rows: 2142000

Table truncated, full table size 246279 Kbytes.

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL8647_080922_modEncode_CE_chip_HX1.ndf.gz 87.5 Mb (ftp)(http) NDF
GPL8647_080922_modEncode_CE_chip_HX1.pos.gz 20.4 Mb (ftp)(http) POS

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