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Platform GPL864 Query DataSets for GPL864
Status Public on Mar 23, 2004
Title Human Promotor Array, v11
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Homo sapiens
Description Human promoter array. Human promoter sequences (1000bp upstream and 500bp downstream from transcription initiation site) were retrieved batch-wise from GoldenPath. PCR primers were selected using an improved version of Primer3 running in-house on a 24 node Linux cluster. Promoter fragments with an average length of 1.2 kb were amplified, purified and spotted onto UltraGAPS coated slides (Corning Incorporated, Corning, NY) in the presence of 50% DMSO. A promoter microarray containing triplicate spots of 3083 promoter sequences and 787 non-promoter controls and 192 non-human controls. Many of the promoters on the array are from genes of particular relevance to cancer and the array includes promoters from most of the genes that are known to be regulated by methylation in cancer.
Keywords = human promoter array
Contributor(s) Wang Y, McClelland M
Submission date Dec 30, 2003
Last update date Jan 17, 2013
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Samples (36) GSM14624, GSM14625, GSM14626, GSM14627, GSM19040, GSM19041 
Series (2)
GSE951 267B1, PC3M, LNCaP Methylation Profile vs. mRNA Expression Level
GSE1810 CHIP Analysis - c-Jun/ATF2

Data table header descriptions
GB_ACC RefSeq accession number
UNIQUE_ID unique identifier
GENE_ID gene identifier
UNIGENE UniGene identifier
SPOT_ID spot identifier
GENE_SYMBOL gene symbol
GENE_FULL_NAME gene full name

Data table
1 NM_002151 NY013 NM_002151 promoter of NM_002151 HPN hepsin (transmembrane protease, serine 1)
2 NM_023009 NY015 NM_023009 promoter of NM_023009 MLP MARCKS-like protein
3 NM_004202 NY017 NM_004202 promoter of NM_004202 TMSB4Y thymosin, beta 4, Y chromosome
4 NM_000657 NY019 NM_000657 promoter of NM_000657 BCL2 B-cell lymphoma protein 2 beta
5 NM_005343 NY021 NM_005343 promoter of NM_005343 HRAS v-Ha-ras Harvey rat sarcoma viral oncogene homolog
6 NM_002467 NY023 NM_002467 promoter of NM_002467 MYC v-myc myelocytomatosis viral oncogene homolog
7 NM_007182 NY037 NM_007182 promoter of NM_007182 RASSF1 Ras association domain family 1 isoform A
8 NM_000038 NY039 NM_000038 promoter of NM_000038 APC adenomatosis polyposis coli
9 NM_002012 NY041 NM_002012 promoter of NM_002012 FHIT fragile histidine triad gene
10 NM_000551 NY043 NM_000551 promoter of NM_000551 VHL elogin binding protein
11 NM_004678 NY045 NM_004678 promoter of NM_004678 VCY2 variable charge, Y chromosome, 2 protein
12 NM_000610 NY047 NM_000610 promoter of NM_000610 CD44 CD44 antigen (homing function and Indian blood group system)
13 NY056 Promoter_N Promoter_N
14 NY058 Promoter_N Promoter_N
15 NY060 Promoter_N Promoter_N
16 NY062 Promoter_N Promoter_N
17 NY064 Promoter_N Promoter_N
18 NY066 Promoter_N Promoter_N
19 NY080 Promoter_N Promoter_N
20 NY082 Promoter_N Promoter_N

Total number of rows: 17328

Table truncated, full table size 1237 Kbytes.

Download family Format
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Supplementary data files not provided

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