GEO help: Mouse over screen elements for information.
Status
Public on Apr 26, 2010
Title
Affymetrix GeneChip Human Genome U133 Plus 2.0 Array [CDF: Hs133P_Hs_ENTREZG.cdf]
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens Manufacturer
Affymetrix
Manufacture protocol
The platform used is the HU133 plus 2.0 array from Affymetrix and is manufactured as such. 17,527 genes were extracted from the array using updated array annotation (Dai et al., 2005) based on reorganizing probes to gene specific probe sets, excluding inaccurate or wrongly annotated probes.
Web link
http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/ Contributor(s)
Gravendeel LA , Kouwenhoven MC , Gevaert O , de Rooi JJ , Stubbs AP , Duijm EJ , Daemen A , Bleeker FE , Bralten LB , Kloosterhof N , de Moor B , van der Spek P , Kros JM , Sillevis Smitt PA , van den Bent MJ , French PJ Submission date
May 12, 2009
Last update date
Apr 26, 2010
Contact name
Pim French
E-mail(s)
p.french@erasmusmc.nl Phone
+31 10 70443 33
Organization name
Erasmus MC
Department
Neurology
Lab
Neurooncology
Street address
Dr Molewaterplein 50
City
Rotterdam
ZIP/Postal code
2040CA
Country
Netherlands
Samples (312)
GSM405200 , GSM405201 , GSM405202 , GSM405203 , GSM405204 , GSM405205
GSM405206 ,
GSM405207 ,
GSM405208 ,
GSM405209 ,
GSM405210 ,
GSM405211 ,
GSM405212 ,
GSM405213 ,
GSM405214 ,
GSM405215 ,
GSM405216 ,
GSM405217 ,
GSM405218 ,
GSM405219 ,
GSM405220 ,
GSM405221 ,
GSM405222 ,
GSM405223 ,
GSM405224 ,
GSM405225 ,
GSM405226 ,
GSM405227 ,
GSM405228 ,
GSM405229 ,
GSM405230 ,
GSM405231 ,
GSM405232 ,
GSM405233 ,
GSM405234 ,
GSM405235 ,
GSM405236 ,
GSM405237 ,
GSM405238 ,
GSM405239 ,
GSM405240 ,
GSM405241 ,
GSM405242 ,
GSM405243 ,
GSM405244 ,
GSM405245 ,
GSM405246 ,
GSM405247 ,
GSM405248 ,
GSM405249 ,
GSM405250 ,
GSM405251 ,
GSM405252 ,
GSM405253 ,
GSM405254 ,
GSM405255 ,
GSM405256 ,
GSM405257 ,
GSM405258 ,
GSM405259 ,
GSM405260 ,
GSM405261 ,
GSM405262 ,
GSM405263 ,
GSM405264 ,
GSM405265 ,
GSM405266 ,
GSM405267 ,
GSM405268 ,
GSM405269 ,
GSM405270 ,
GSM405271 ,
GSM405272 ,
GSM405273 ,
GSM405274 ,
GSM405275 ,
GSM405276 ,
GSM405277 ,
GSM405278 ,
GSM405279 ,
GSM405280 ,
GSM405281 ,
GSM405282 ,
GSM405283 ,
GSM405284 ,
GSM405285 ,
GSM405286 ,
GSM405287 ,
GSM405288 ,
GSM405289 ,
GSM405290 ,
GSM405291 ,
GSM405292 ,
GSM405293 ,
GSM405294 ,
GSM405295 ,
GSM405296 ,
GSM405297 ,
GSM405298 ,
GSM405299 ,
GSM405300 ,
GSM405301 ,
GSM405302 ,
GSM405303 ,
GSM405304 ,
GSM405305 ,
GSM405306 ,
GSM405307 ,
GSM405308 ,
GSM405309 ,
GSM405310 ,
GSM405311 ,
GSM405312 ,
GSM405313 ,
GSM405314 ,
GSM405315 ,
GSM405316 ,
GSM405317 ,
GSM405318 ,
GSM405319 ,
GSM405320 ,
GSM405321 ,
GSM405322 ,
GSM405323 ,
GSM405324 ,
GSM405325 ,
GSM405326 ,
GSM405327 ,
GSM405328 ,
GSM405329 ,
GSM405330 ,
GSM405331 ,
GSM405332 ,
GSM405333 ,
GSM405334 ,
GSM405335 ,
GSM405336 ,
GSM405337 ,
GSM405338 ,
GSM405339 ,
GSM405340 ,
GSM405341 ,
GSM405342 ,
GSM405343 ,
GSM405344 ,
GSM405345 ,
GSM405346 ,
GSM405347 ,
GSM405348 ,
GSM405349 ,
GSM405350 ,
GSM405351 ,
GSM405352 ,
GSM405353 ,
GSM405354 ,
GSM405355 ,
GSM405356 ,
GSM405357 ,
GSM405358 ,
GSM405359 ,
GSM405360 ,
GSM405361 ,
GSM405362 ,
GSM405363 ,
GSM405364 ,
GSM405365 ,
GSM405366 ,
GSM405367 ,
GSM405368 ,
GSM405369 ,
GSM405370 ,
GSM405371 ,
GSM405372 ,
GSM405373 ,
GSM405374 ,
GSM405375 ,
GSM405376 ,
GSM405377 ,
GSM405378 ,
GSM405379 ,
GSM405380 ,
GSM405381 ,
GSM405382 ,
GSM405383 ,
GSM405384 ,
GSM405385 ,
GSM405386 ,
GSM405387 ,
GSM405388 ,
GSM405389 ,
GSM405390 ,
GSM405391 ,
GSM405392 ,
GSM405393 ,
GSM405394 ,
GSM405395 ,
GSM405396 ,
GSM405397 ,
GSM405398 ,
GSM405399 ,
GSM405400 ,
GSM405401 ,
GSM405402 ,
GSM405403 ,
GSM405404 ,
GSM405405 ,
GSM405406 ,
GSM405407 ,
GSM405408 ,
GSM405409 ,
GSM405410 ,
GSM405411 ,
GSM405412 ,
GSM405413 ,
GSM405414 ,
GSM405415 ,
GSM405416 ,
GSM405417 ,
GSM405418 ,
GSM405419 ,
GSM405420 ,
GSM405421 ,
GSM405422 ,
GSM405423 ,
GSM405424 ,
GSM405425 ,
GSM405426 ,
GSM405427 ,
GSM405428 ,
GSM405429 ,
GSM405430 ,
GSM405431 ,
GSM405432 ,
GSM405433 ,
GSM405434 ,
GSM405435 ,
GSM405436 ,
GSM405437 ,
GSM405438 ,
GSM405439 ,
GSM405440 ,
GSM405441 ,
GSM405442 ,
GSM405443 ,
GSM405444 ,
GSM405445 ,
GSM405446 ,
GSM405447 ,
GSM405448 ,
GSM405449 ,
GSM405450 ,
GSM405451 ,
GSM405452 ,
GSM405453 ,
GSM405454 ,
GSM405455 ,
GSM405456 ,
GSM405457 ,
GSM405458 ,
GSM405459 ,
GSM405460 ,
GSM405461 ,
GSM405462 ,
GSM405463 ,
GSM405464 ,
GSM405465 ,
GSM405466 ,
GSM405467 ,
GSM405468 ,
GSM405469 ,
GSM405470 ,
GSM405471 ,
GSM405472 ,
GSM405473 ,
GSM405474 ,
GSM405475 ,
GSM405476 ,
GSM405477 ,
GSM405478 ,
GSM405479 ,
GSM405480 ,
GSM405481 ,
GSM405482 ,
GSM405483 ,
GSM1056851 ,
GSM1056852 ,
GSM1056853 ,
GSM1056854 ,
GSM1056855 ,
GSM1056856 ,
GSM1056857 ,
GSM1056858 ,
GSM1056859 ,
GSM1056860 ,
GSM1056861 ,
GSM1056862 ,
GSM1056863 ,
GSM1056864 ,
GSM1056865 ,
GSM1056866 ,
GSM1056867 ,
GSM1056868 ,
GSM1056869 ,
GSM1056870 ,
GSM1056871 ,
GSM1056872 ,
GSM1056873 ,
GSM1056874 ,
GSM1056875 ,
GSM1056876 ,
GSM1056877 ,
GSM1056878 Series (3)
GSE16011 Intrinsic Gene Expression Profiles of Gliomas are a Better Predictor of Survival than Histology
GSE43113 Intrinsic glioma subtypes in EORTC 26951 (part 2)
GSE43388 Intrinsic glioma subtypes in EORTC 26951
Relations Alternative to
GPL570
Data table header descriptions ID ORF Entrez GeneID
Chr Chromosome
Chr Strand Strand
Chr From start on chromosome
Chr To end on chromosome
Probe List (X, Y array position) Description gene name
Data table ID ORF Chr Chr Strand Chr From Chr To Probe List (X, Y array position) Description 1_at
1 19
-
63553607
63550138
(296,467)(952,503)(1038,413)(628,415)(535,317)(766,307)(89,765)(288,261)
alpha-1-B glycoprotein
10_at
10 8
+
18302363
18302742
(1043,363)(814,163)(912,231)(792,879)(631,1143)(368,1005)(38,157)(135,159)(867,719)(62,921)(788,381)
N-acetyltransferase 2 (arylamine N-acetyltransferase)
100_at
100 20
-
42687657
42681620
(320,625)(687,567)(156,657)(87,457)(1020,203)(30,311)(438,761)(267,445)(497,33)(490,223)(374,785)(192,1109)(123,623)(15,745)(897,951)(297,67)(268,493)(678,323)(645,905)(656,389)
adenosine deaminase
1000_at
1000 18
-
23818990
23784947
(611,519)(528,783)(610,419)(379,395)(252,675)(264,485)(709,1045)(457,975)(1112,933)(943,803)(364,601)(467,725)(1005,1111)(1062,893)(816,815)(226,637)(737,137)(582,1083)(143,383)
cadherin 2, type 1, N-cadherin (neuronal)
10000_at
10000 1
-
241793688
241733850
(116,251)(222,873)(1032,609)(200,793)(618,909)(525,1049)(675,225)(359,637)(923,127)(435,609)(587,659)(941,597)(1083,375)(1002,1027)(293,397)(1049,151)(666,1121)(1108,319)(972,307)(931,161)(1124,593)(1083,979)(686,683)(341,705)(634,541)(1025,195)(87,709)(510,545)(1050,633)(557,127)(1133,123)(417,141)
v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)
10001_at
10001 14
-
70133090
70121155
(474,9)(295,1081)(639,175)(515,651)(465,341)(336,169)(630,671)(1001,747)(76,167)(206,599)(986,621)(273,661)(882,121)(492,485)(1029,865)(447,41)(239,791)(632,3)(89,727)
mediator complex subunit 6
10002_at
10002 15
+
69893747
69897526
(24,599)(589,147)(430,527)(549,575)(1135,149)(169,205)(979,533)(9,825)(211,329)(719,87)(592,905)(602,819)(533,949)(989,433)(1029,593)(896,549)(534,455)(761,705)(316,911)(678,273)
nuclear receptor subfamily 2, group E, member 3
10003_at
10003 11
+
89531005
89565329
(786,413)(700,349)(1099,1053)(180,61)(69,523)(513,65)(453,787)(388,285)(224,7)(386,527)(361,671)(911,1141)
N-acetylated alpha-linked acidic dipeptidase 2
10004_at
10004 11
-
64570315
64568892
(707,391)(722,611)(906,321)(350,915)(728,527)(217,945)(845,505)(133,623)(1159,569)(267,139)(775,405)(370,567)(391,303)(619,89)(170,1027)(563,803)(461,903)(739,675)(176,547)(1013,825)(12,449)
N-acetylated alpha-linked acidic dipeptidase-like 1
10005_at
10005 20
-
43906394
43903905
(283,963)(101,231)(1063,343)(600,1003)(760,169)(248,297)(106,501)(829,791)
acyl-CoA thioesterase 8
10006_at
10006 10
-
27077567
27075969
(571,665)(249,545)(1008,945)(685,697)(850,65)(999,557)(388,299)(942,237)(86,1063)(786,69)(1093,561)(394,645)(986,781)(102,1015)(810,537)(73,831)(193,711)(6,511)(21,255)(947,769)(82,1079)
abl-interactor 1
10007_at
10007 5
-
141360954
141360535
(674,85)(934,335)(853,295)(1028,189)(754,1095)(337,97)(361,339)(554,1101)(312,891)(1126,1157)(1159,887)
glucosamine-6-phosphate deaminase 1
10008_at
10008 11
-
73845467
73843869
(492,431)(393,211)(940,527)(606,919)(283,969)(519,21)(129,793)(18,395)(503,515)(114,765)(133,73)(772,285)(349,31)(914,885)(664,629)(69,1079)(827,147)(945,869)(603,235)(1062,129)(340,145)(982,47)(442,261)(983,1081)(888,625)(522,547)(191,235)(814,573)(712,703)(174,1125)(737,689)
potassium voltage-gated channel, Isk-related family, member 3
10009_at
10009 X
+
119273291
119276236
(804,549)(699,329)(1007,795)(1044,423)(716,709)(1073,1103)(1158,285)(974,259)(871,833)(271,1035)(867,1115)(8,139)(1055,515)(994,879)(277,1155)(573,931)(1009,703)(6,153)(1005,103)
zinc finger and BTB domain containing 33
1001_at
1001 16
+
67289906
67290358
(299,791)(783,709)(288,67)(726,701)(84,1121)(252,899)(1073,479)(507,277)(1112,665)(393,31)(1125,1097)
cadherin 3, type 1, P-cadherin (placental)
10010_at
10010 2
+
161744395
161800801
(1074,1069)(664,837)(230,887)(57,213)(1143,451)(513,525)(365,59)(327,769)(789,299)(124,379)(628,1021)(616,211)(898,775)(749,1077)(1096,571)(578,767)(1072,377)(49,289)(54,463)(510,361)(692,1139)(17,223)(905,449)(454,715)(965,713)(395,837)(702,817)(221,55)(1137,23)(1023,17)
TRAF family member-associated NFKB activator
10011_at
10011 5
-
139911884
139910293
(545,319)(385,259)(1000,843)(1145,1)(624,1075)(34,135)(297,913)(450,435)(245,637)(409,635)(253,191)(763,151)(470,45)(148,389)(751,889)(631,939)(301,319)(885,791)(252,473)(982,65)(370,931)
steroid receptor RNA activator 1
10013_at
10013 X
+
48560775
48568265
(149,993)(719,515)(439,525)(136,907)(927,1091)(1065,777)(624,633)(495,745)(1086,707)(429,1159)(510,307)(1092,1135)(881,521)(666,449)(797,615)(114,483)(192,195)(506,803)
histone deacetylase 6
10014_at
10014 17
-
39513072
39509712
(321,163)(925,1089)(24,399)(539,535)(592,213)(27,417)(816,249)(315,343)(1152,839)(409,101)(328,485)(347,1087)(1045,991)(266,833)(242,713)(458,895)(644,905)(577,1155)
histone deacetylase 5
10015_at
10015 3
+
33882914
33885875
(582,461)(1136,133)(604,29)(883,91)(216,273)(110,529)(277,187)(423,485)(546,311)(805,605)(424,367)(868,677)(956,585)(1052,743)(267,941)(656,835)(78,309)(853,445)(581,757)(761,529)(104,357)(675,215)
programmed cell death 6 interacting protein
17527 3684 Kbytes .Supplementary file Size Download File type/resource GPL8542_Hs133P_Hs_ENTREZG.cdf.gz
7.7 Mb
(ftp) (http) CDF
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