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GEO help: Mouse over screen elements for information. |
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| Status |
Public on May 01, 2009 |
| Title |
Lewis-Sigler Institute Saccharomyces 13K [20071114MD_PMC] |
| Technology type |
spotted oligonucleotide |
| Distribution |
non-commercial |
| Organisms |
Saccharomyces bayanus; Saccharomyces cerevisiae |
| Manufacturer |
Lewis-Sigler Institute Microarray Facility |
| Manufacture protocol |
The following parameters were used to manufacture the printed array named "20071114MD_PMC"
Printer: Arrayer 250A
Array Configuration: (columns X rows) 48 sectors ( 4 X 12 spotted) Standard 48 tip
Spot Columns per Sector: 16
Spot Rows per Sector: 17
Column Spacing: 235
Row Spacing: 240
Plate Orientation: rotated 90 degrees clockwise (P1 top-left, A1 top-right)
Printhead Dip Dynamics: top to bottom, right to left
Sector Spotting Dynamics: left to right, top to bottom
Number of Slides: 254
Plates used in this print, in order.
PLATEID PLATENAME PLATE_VISITS IS_FLIPPED
100700 SBSC_SONIC_1
100508 HYBRIDSB_9
100504 HYBRIDSB_5
100526 HYBRIDSC_14
100522 HYBRIDSC_10
100502 HYBRIDSB_3
100512 HYBRIDSB_13
100525 HYBRIDSC_13
100506 HYBRIDSB_7
100521 HYBRIDSC_9
100511 HYBRIDSB_12
100501 HYBRIDSB_2
100704 SBSC_SUPP_1
100527 HYBRIDSC_15
100510 HYBRIDSB_11
100505 HYBRIDSB_6
100514 HYBRIDSC_2
100528 HYBRIDSC_16
100503 HYBRIDSB_4
100507 HYBRIDSB_8
100509 HYBRIDSB_10
100513 HYBRIDSC_1
100500 HYBRIDSB_1
100529 HYBRIDSC_17
100517 HYBRIDSC_5
100524 HYBRIDSC_12
100519 HYBRIDSC_7
100515 HYBRIDSC_3
100523 HYBRIDSC_11
100520 HYBRIDSC_8
100518 HYBRIDSC_6
100516 HYBRIDSC_4
100700 SBSC_SONIC_1
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| Description |
SBSC print, a multi-organism print.
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| Web link |
http://downloads.yeastgenome.org/sequence/fungal_genomes/S_bayanus/WashU/
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| Submission date |
Apr 28, 2009 |
| Last update date |
May 01, 2009 |
| Contact name |
Maitreya J. Dunham |
| E-mail(s) |
maitreya@uw.edu
|
| Phone |
206-543-2338
|
| Organization name |
University of Washington
|
| Department |
Genome Sciences
|
| Lab |
Dunham Lab
|
| Street address |
Foege Building, S403B, Box 355065
|
| City |
Seattle |
| State/province |
WA |
| ZIP/Postal code |
98195-5065 |
| Country |
USA |
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| Samples (67)
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GSM398696, GSM398697, GSM398698, GSM398699, GSM398700, GSM398701
GSM415459, GSM415460, GSM415461, GSM415462, GSM415463, GSM415464, GSM415534, GSM415535, GSM415536, GSM415537, GSM415538, GSM415539, GSM415540, GSM415541, GSM415542, GSM415543, GSM415544, GSM415545, GSM415558, GSM415559, GSM415560, GSM415561, GSM415562, GSM415567, GSM415568, GSM415569, GSM415570, GSM415571, GSM415572, GSM415598, GSM415599, GSM415600, GSM415601, GSM415602, GSM415603, GSM415604, GSM415605, GSM415606, GSM415607, GSM415608, GSM415609, GSM415610, GSM415622, GSM415623, GSM415624, GSM415625, GSM415626, GSM415627, GSM415628, GSM415770, GSM415771, GSM415773, GSM415774, GSM415775, GSM415776, GSM415777, GSM415778, GSM415779, GSM415780, GSM415781, GSM1153193
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| Series (3) |
| GSE15877 |
Telomere behavior in a hybrid yeast |
| GSE16544 |
Systematic planning of genome-scale experiments in poorly studied species. |
| GSE47613 |
A New System for Comparative Functional Genomics of Saccharomyces Yeasts |
|
| Data table header descriptions |
| ID |
feature/spot number |
| ORF |
|
| ORGANISM |
the organism of the spotted sequence |
| SEQUENCE |
oligonucleotide sequence |
| SPOT_ID |
control |
| SGD_ORF |
clone identifier (ORF name included in SGD sequence assembly of Saccharomyces bayanus genome) |
| Data table |
| ID |
ORF |
ORGANISM |
SEQUENCE |
SPOT_ID |
SGD_ORF |
| 1 |
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--SBSC_SONIC_GENOMIC |
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| 2 |
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|
--SBSC_SONIC_GENOMIC |
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| 3 |
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|
--SBSC_SONIC_GENOMIC |
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| 4 |
|
|
|
--SBSC_SONIC_GENOMIC |
|
| 5 |
|
|
|
--SBSC_SONIC_GENOMIC |
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| 6 |
|
|
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--SBSC_SONIC_GENOMIC |
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| 7 |
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--SBSC_SONIC_GENOMIC |
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| 8 |
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--SBSC_SONIC_GENOMIC |
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| 9 |
|
Saccharomyces bayanus |
TACCCCTGCACCCTGGTCGACTGGCTGATCATCGTGGGCGTCACGCTGCCGGCGCTGTGCTACCTGTATC |
|
631.44 |
| 10 |
|
Saccharomyces bayanus |
ATCTTTTCTGCAACTTTCTCTATCGACCTGTTTGATAAACTATCCTCGTCTCATCAGGCTAGGAATAAAT |
|
678.81 |
| 11 |
|
Saccharomyces bayanus |
CATCAAGCTGGTCAAGAGAACTATGGACCCCGAGCAGCTCGGCCACGCCGCCAAGAGGCGCAAGCCATGA |
|
572.9 |
| 12 |
|
Saccharomyces bayanus |
GAAGGTACAACCTGGATCCTGATTTAAAATTCGCAGCTACACCACCCTATGACGGAACTTTGACGAAGTA |
|
672.51 |
| 13 |
|
Saccharomyces bayanus |
ATTAGCCACATCTCCGTCAAAGAGGTTTTCTTCATTGTCTCTGACGCCTTATGGTAGGAAAATTTTAGGC |
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673.25 |
| 14 |
|
Saccharomyces bayanus |
CTGACATGTTCAACGACAAAATAGAGGAGTGCGAAAAAAACGATATACCATTTGAAGATTGTATAATGGA |
|
667.74 |
| 15 |
|
Saccharomyces bayanus |
ACTATTGCTGAAACCCAAGGTAGTAAAGTCGTCATTGAAGGTGTTATTGACAATATTGTGAAGTTGTGTT |
|
468.3 |
| 16 |
|
Saccharomyces bayanus |
TCTTGCAAAGTTGTGTTGACGGGGGAGACCTACTAATAGACAAACAATTGAGTGGCATTTACTATTATAA |
|
662.36 |
| 17 |
|
Saccharomyces bayanus |
TTGGATCCGGACTCTGACGTAGAGATAGTTGCAGACTCCGACGCTGTTGCGAGTTCGAATATAAATGATA |
|
673.44 |
| 18 |
|
Saccharomyces bayanus |
ATATCAGACACTGTATGGGAGGAGAAATACGGAAGTGTTAGCTGTTTTGAAAATCCTTCGAAGTATAATT |
|
636.12 |
| 19 |
|
Saccharomyces bayanus |
TATTATTTCGTTTTTAATAAACGATGGGATGCTGCTAGACTAGTGACTTATTGGAAGTTTGGCGTTACTG |
|
626.9 |
| 20 |
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Saccharomyces bayanus |
GGTTATTACCGTGTCTCATACGAATCCAAAGAGTGTTATACCCAAATCAGCGAAAAAATAATCGAAGGTA |
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665.37 |
Total number of rows: 12672
Table truncated, full table size 1236 Kbytes.
| Supplementary data files not provided |
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