NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL8239 Query DataSets for GPL8239
Status Public on Jun 30, 2009
Title University of Cambridge/Bead-based microRNA profiling platform version 4
Technology type oligonucleotide beads
Distribution non-commercial
Organism Mus musculus
Manufacturer Luminex
Manufacture protocol The expression of 318 unique murine miRNAs was determined using a bead-based flow-cytometric profiling platform as described previously (Lu et al. Nature 2005, Blenkiron et al. Genome Biology 2007). The platform was adapted to include 334 probes for 318 unique murine miRNAs based on the miRNA repository miRBase 9.1 as well as probes for six artificial control RNAs. In brief, oligonucleotide capture probes complementary to the miRNAs of interest were conjugated to colour coded polystyrene beads (xMAP beads, Luminex Corporation, Austin, TX, USA) allowing the simultaneous detection of 90 different target miRNAs.
 
 
Submission date Mar 02, 2009
Last update date Feb 15, 2024
Contact name Leonard Goldstein
Organization name Garvan Institute of Medical Research
Street address 384 Victoria St
City Darlinghurst
ZIP/Postal code 2010
Country Australia
 
Samples (85) GSM375972, GSM375973, GSM375974, GSM375975, GSM375976, GSM375977 
Series (3)
GSE15055 Characterisation of microRNA expression in post-natal mouse mammary gland development [miRNA]
GSE15057 Characterisation of microRNA expression in post-natal mouse mammary gland development
GSE48186 MiR-210 is induced by Oct-2, regulates B-cells and inhibits autoantibody production

Data table header descriptions
ID
miRNA_ID Name of mature mouse miRNA (miRBase 9.1) or name of control probe
SET_ASSIGN Bead set assignment
REPLICATE Replicate probe
CTRL_TYPE Control feature; type of control
USAGE Probe used in analysis
SPOT_ID

Data table
ID miRNA_ID SET_ASSIGN REPLICATE CTRL_TYPE USAGE SPOT_ID
1 mmu-miR-155 1 Used
2 mmu-miR-10b 1 Used
3 mmu-miR-201 1 Used
4 mmu-miR-202 1 Used
5 mmu-miR-207 1 Used
6 mmu-miR-200b 1 Used
7 mmu-miR-199b 1 Used
8 mmu-miR-101b 1 Used
9 mmu-miR-129-3p 1 Used
10 mmu-miR-133a* 1 Used
11 mmu-miR-140* 1 Used
12 mmu-miR-216b 1 Used
13 mmu-miR-540 1 Used
14 mmu-miR-541 1 Used
15 mmu-miR-542-5p 1 Used
16 mmu-miR-542-3p 1 Used
17 mmu-miR-543 1 Used
18 mmu-miR-546 1 Used
19 mmu-miR-547 1 Used
20 mmu-miR-592 1 Used

Total number of rows: 359

Table truncated, full table size 9 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap