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Status
Public on Mar 01, 2009
Title
NimbleGen 071121_Celegans180_ChIP03_design_ID_6737
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Caenorhabditis elegans Manufacturer
NimbleGen Systems Inc.
Manufacture protocol
HX1 design for catalog for C elegans 180/ 40bp interval
Web link
http://www.nimblegen.com/products/chip/index.html Submission date
Jan 29, 2009
Last update date
Mar 01, 2009
Contact name
Barbara J. Meyer
E-mail(s)
bjmeyer@berkeley.edu Phone
510 643 5583
Organization name
HHMI/UCB
Department
MCB
Lab
Meyer
Street address
16 Barker Hall #3204
City
Berkeley
State/province
CA
ZIP/Postal code
94720
Country
USA
Samples (87)
GSM365607 , GSM365608 , GSM634552 , GSM634553 , GSM634554 , GSM634555
GSM634556 ,
GSM634557 ,
GSM634558 ,
GSM634559 ,
GSM634560 ,
GSM634561 ,
GSM634562 ,
GSM634563 ,
GSM634564 ,
GSM634565 ,
GSM634566 ,
GSM634567 ,
GSM634568 ,
GSM634569 ,
GSM634570 ,
GSM634571 ,
GSM634572 ,
GSM634573 ,
GSM634574 ,
GSM634575 ,
GSM634576 ,
GSM634577 ,
GSM634578 ,
GSM634579 ,
GSM634580 ,
GSM634581 ,
GSM634582 ,
GSM634583 ,
GSM634584 ,
GSM634585 ,
GSM634586 ,
GSM634587 ,
GSM634588 ,
GSM634589 ,
GSM634590 ,
GSM634591 ,
GSM634592 ,
GSM634593 ,
GSM634594 ,
GSM634595 ,
GSM634596 ,
GSM635476 ,
GSM655300 ,
GSM914045 ,
GSM914046 ,
GSM914047 ,
GSM914048 ,
GSM914049 ,
GSM914050 ,
GSM1177490 ,
GSM1177491 ,
GSM1177492 ,
GSM1177493 ,
GSM1177494 ,
GSM1177495 ,
GSM1177496 ,
GSM1177497 ,
GSM1177498 ,
GSM1177499 ,
GSM1177500 ,
GSM1177501 ,
GSM1177504 ,
GSM1177506 ,
GSM1177507 ,
GSM1177508 ,
GSM1177509 ,
GSM1177510 ,
GSM1177511 ,
GSM1177512 ,
GSM1177513 ,
GSM1177514 ,
GSM1177515 ,
GSM1177516 ,
GSM1177517 ,
GSM1177518 ,
GSM1177519 ,
GSM1177520 ,
GSM1177521 ,
GSM1177522 ,
GSM1177523 ,
GSM1177524 Series (7)
GSE14640 A condensin-like dosage compensation complex acts at a distance to control expression throughout the genome
GSE14652 DCC binding and function (ChIP-chip: SDC-2)
GSE25833 Examination of DPY-30, DPY-27, SDC-3, DPY-26, MIX-1, SMC-4, ASH-2, RNA Polymerase II binding in wild type and DCC mutant embryos
GSE25834 An MLL/COMPASS subunit functions in the C. elegans dosage compensation complex to target X chromosomes for transcriptional regulation of gene expression
GSE25877 Comparison of DPY-27 binding in embryos and fed L1 larvae
GSE37226 LMN-1-DamID in N2 and set-25(n5021) met-2(n4256) mutant early C. elegans embryos
GSE48413 Examination of DPY-30, DPY-27, SDC-3, DPY-26, DPY-28, SDC-2, and SUMOylated DPY-27 binding in wild type embryos and smo-1 RNAi treated embryos
Data table header descriptions ID NimbleGen PROBE_ID
SEQ_ID CHROMOSOME Chromosome
POSITION PROBE_COUNT LENGTH GC SEQUENCE
Data table ID SEQ_ID CHROMOSOME POSITION PROBE_COUNT LENGTH GC SEQUENCE CHRXFS009162689
chrX:1-17718851
chrX
9162689
1
55
0.35
TTTTCTCACGAAACCAGCACATTTTCTTTGTGTTTAATGTATCCCGGATTTGAAA
CHRXFS009823847
chrX:1-17718851
chrX
9823847
1
61
0.30
AGTCAACAATACAATGAACAAAAATATCATGAAAGAGGTGGAAATTCAATTATGCAGAGAA
CHRVFS015782885
chrV:1-20919568
chrV
15782885
1
54
0.28
TCTTGAAAATTTCACGAGACGCTAGAAACTTTAAATGCTTTCAAAAAATTCAAA
CHRVFS013321164
chrV:1-20919568
chrV
13321164
1
55
0.35
AATTGCCCAAAAACTCTGAAAGAATACCGGAAATATCTTTTATGGCATACATTGG
CHRVFS020401202
chrV:1-20919568
chrV
20401202
1
53
0.42
AATGCTTCTTTCCGTGTGGTTCCCTGTTGACTCAACGTTTTTCGATATCGTTT
CHRVFS012843721
chrV:1-20919568
chrV
12843721
1
55
0.33
ATATTCCAAGCAAAGGAGACTTGTTTCACTTTTCTCAGCAATTTCCTAAAACAAA
CHRXFS012023688
chrX:1-17718851
chrX
12023688
1
56
0.34
TCGGTTCCACAAGATAGAAAGTCGGTAATAAGAAAAACTGGTCATTAAATCATGAA
CHRXFS005659208
chrX:1-17718851
chrX
5659208
1
58
0.36
AGAAAATATTAACGAGTAGTAAAGAATCCCGACGGCATAAGACATGCAATATTGAGTG
CHRXFS003481725
chrX:1-17718851
chrX
3481725
1
61
0.38
GGATTCGATCTTATCAAGGAGATTAGGAAGACTGTCAACGCAGATAATCAGTAAGAGAAAT
CHRXFS016131283
chrX:1-17718851
chrX
16131283
1
50
0.46
GGGAAACGGGGGCATTTAAACATTTCAAATGGGCACTCAATGTGCACTTG
CHRXFS006188565
chrX:1-17718851
chrX
6188565
1
54
0.26
AATACATTTAAGTTGTGAAATCGTTTTGACTGCAACTTTGAAAAATTACAAAGA
CHRVFS010100125
chrV:1-20919568
chrV
10100125
1
55
0.25
AAGAAACATGAACAAATTTATTAATTTGTGAATAATGCGGTTTGCGAGAATAAAA
CHRXFS003566124
chrX:1-17718851
chrX
3566124
1
51
0.22
TAAGTTTTTCAGTGATTTCCTAAATACTGAAAAAAAATTCTATACGAAAAA
CHRXFS012299608
chrX:1-17718851
chrX
12299608
1
54
0.28
TGAAATTAGTAACTTTTAAAATATGTAATGTAAACCCGATGTGGCAATTACCAT
CHRXFS007390886
chrX:1-17718851
chrX
7390886
1
57
0.40
TGTGTATCACATAATGAATTTCAAGCATCTCTACATCTTTCCCAAGACTCCACTGGC
CHRVFS008923081
chrV:1-20919568
chrV
8923081
1
53
0.42
TTTTATGCCTTTTGGCCGTTGCTGTAGCCGCAAGTATTATTGGAAAGAAAGCT
CHRVFS013861611
chrV:1-20919568
chrV
13861611
1
58
0.26
AAGATGCAGGTGAATTTTGAATAATGTTTACTGTTTTTGCTGAATTTTAAATGTCATA
CHRVFS008371242
chrV:1-20919568
chrV
8371242
1
52
0.25
AGTCTGTTATAAAGTGTTCAAAAACGAAACAATAAAATGAAAATCAACGAAA
CHRVFS013727084
chrV:1-20919568
chrV
13727084
1
59
0.27
GGTATCAGAATAATTTGCTAATATTAATGTCTGAAACAATCACAATTAGTGAAAGTTAC
CHRVFS008502521
chrV:1-20919568
chrV
8502521
1
58
0.40
TGATAATAATGGAGAGGGAAAAGATACAGAGACCGGCGAATTCGTTGTTCAATTCGAT
2033813 224001 Kbytes .Supplementary file Size Download File type/resource GPL8134_Celegans180_ChIP_HX1.ndf.gz
116.5 Mb
(ftp) (http) NDF
GPL8134_Celegans180_ChIP_HX1.pos.gz
19.8 Mb
(ftp) (http) POS
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