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Platform GPL7524 Query DataSets for GPL7524
Status Public on Nov 05, 2008
Title NimbleGen mouse (mm8) whole genome tiling array 2 of 4 [2007-08-17_MM8_Economy_02]
Technology type in situ oligonucleotide
Distribution commercial
Organism Mus musculus
Manufacturer Nimblegen Systems Inc.
Manufacture protocol Mouse whole genome tiling arrays
 
 
Submission date Oct 24, 2008
Last update date Jun 05, 2012
Organization NimbleGen Systems, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov
Phone 608-218-7600
URL http://www.nimblegen.com/
Street address 504 S. Rosa Road
City Madison
State/province WI
ZIP/Postal code 53719
Country USA
 
Samples (27) GSM336514, GSM336515, GSM336516, GSM336517, GSM558453, GSM558457 
Series (9)
GSE13445 Large organized chromatin K9-modifications (LOCKs) distinguish differentiated from embryonic stem cells
GSE22475 Genome-wide location analysis of Dnmt3a-mediated epigenetic regulation in murine postnatal subventricular zone (SVZ) neural stem cells (NSCs) [NimbleGen]
GSE22476 Dnmt3a-dependent non-promoter DNA methylation facilitates transcription of neurogenic genes

Data table header descriptions
ID
Chromosome Chromosome number for each probe
RANGE_GB NCBI Build 36.1 RefSeq Assembly
SPOT_ID
RANGE_START Position for each probe
SEQUENCE Sequence for each probe.

Data table
ID Chromosome RANGE_GB SPOT_ID RANGE_START SEQUENCE
CHR04FS119314194 chr4 NC_000070.4 119314194 ACAGAGCTCTTAATATAGAGACCGAGATCATGTTCCTTATCTGTTCCTCCTG
CHR04FS119314359 chr4 NC_000070.4 119314359 ATGGGAGCGTTGTTGCTTTAAAGGCTAACTGCTACTGTGCGCTCTGTAGA
CHR04FS119314564 chr4 NC_000070.4 119314564 GGAGATACATTTAGTCTGAAGTCCTGGCAGATTCCAAGATTCAACTTGATGGAAGATAACAT
CHR04FS119314755 chr4 NC_000070.4 119314755 CGGTTTCCAGTCTACTACCCAGGGCACATTTTACCACTCCCTAACTGTAC
CHR04FS119314945 chr4 NC_000070.4 119314945 TGTAGGTGCCACCCAGTCTGGACTGCACAGCCGTGAGGTGTAAAGCAGAG
CHR04FS119315193 chr4 NC_000070.4 119315193 AAATATAATAAAGCTAGAAACAAGAGAAACTGAAAAATTATGTCTAAAGGCTATA
CHR04FS119315362 chr4 NC_000070.4 119315362 GTTTTTGTGCCCTGTTTAAGAAGGCAGATGGATCAGGAGCACAAACCAAAT
CHR04FS119315553 chr4 NC_000070.4 119315553 CCTGCTGGGAACTTGGTGATCTTTGGTTGGCATTTAATAGGACTATACTATATATTAT
CHR04FS119317265 chr4 NC_000070.4 119317265 CTCCTGTAGGCCAATTTCAGATTAACAAAGTAACTGTTATGGTCTGTTTTGAAGCTG
CHR04FS119317470 chr4 NC_000070.4 119317470 TGACATTATGCTACAGTTGAAAGAGGGCTGATGGTGGACTTGGGTAGAAG
CHR04FS119317655 chr4 NC_000070.4 119317655 AATTCAGACATTGTGCTCAGAACTGGAAGGATGTCTGACTTATGTGAGCACA
CHR04FS119317880 chr4 NC_000070.4 119317880 ACAGCAGTGCTTAAGGTCTGAATGCATACATTCATTGTCAGATCCCATCTCT
CHR04FS119318050 chr4 NC_000070.4 119318050 TGAAATCCCAAGGTGGTGGGAAGGCAGAGTACGGGAGTTGGTGATGTGAA
CHR04FS119318245 chr4 NC_000070.4 119318245 AAGTGTTCCTGAATGCCAACTGGAGTTTGAGGCATGAGCCAAGACTCAAA
CHR04FS119318466 chr4 NC_000070.4 119318466 ATGAAAGCACTATTACAAATGATGTGTGAGGGGCTCGTTAGGCAAAGTGTTTG
CHR04FS119318880 chr4 NC_000070.4 119318880 TTCAGTTATTGACTGCATTTCCAGGCCATGAGGTGGTGAAGCTAATGAGT
CHR04FS119319061 chr4 NC_000070.4 119319061 AAAAGATAGCATAGACTCTTCACTTCCTCTGGCTGTGGCTGCAGCTCAGA
CHR04FS119319271 chr4 NC_000070.4 119319271 CAAAGTTCACATTTGGTTTCAGATAAAAAGACAAATTGGCATGGGCATGGCTCTTAGG
CHR04FS119319451 chr4 NC_000070.4 119319451 AGACTTAATACAGTATTAGCGACTTCCTGACTCAACAGACCTTGGTGAGGT
CHR04FS119319691 chr4 NC_000070.4 119319691 ATTCCACTCTCTGCTCAGTGGGCATCCTTGCAAGGGTGTCTCTGACATGA

Total number of rows: 2161350

Table truncated, full table size 209873 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL7524_2007-08-17_MM8_Economy_02_HX1.ndf.gz 134.8 Mb (ftp)(http) NDF
GPL7524_2007-08-17_MM8_Economy_02_HX1.pos.gz 24.3 Mb (ftp)(http) POS

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