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GEO help: Mouse over screen elements for information. |
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Status |
Public on Nov 05, 2008 |
Title |
NimbleGen mouse (mm8) whole genome tiling array 2 of 4 [2007-08-17_MM8_Economy_02] |
Technology type |
in situ oligonucleotide |
Distribution |
commercial |
Organism |
Mus musculus |
Manufacturer |
Nimblegen Systems Inc. |
Manufacture protocol |
Mouse whole genome tiling arrays
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Submission date |
Oct 24, 2008 |
Last update date |
Jun 05, 2012 |
Organization |
NimbleGen Systems, Inc. |
E-mail(s) |
geo@ncbi.nlm.nih.gov
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Phone |
608-218-7600
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URL |
http://www.nimblegen.com/
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Street address |
504 S. Rosa Road
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City |
Madison |
State/province |
WI |
ZIP/Postal code |
53719 |
Country |
USA |
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Samples (27)
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GSM336514, GSM336515, GSM336516, GSM336517, GSM558453, GSM558457
GSM558461, GSM558465, GSM601586, GSM601590, GSM601594, GSM601596, GSM659631, GSM659635, GSM659639, GSM659643, GSM659647, GSM684515, GSM684519, GSM700046, GSM700048, GSM700050, GSM700052, GSM700054, GSM700056, GSM700058, GSM700060
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Series (9)
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GSE13445 |
Large organized chromatin K9-modifications (LOCKs) distinguish differentiated from embryonic stem cells |
GSE22475 |
Genome-wide location analysis of Dnmt3a-mediated epigenetic regulation in murine postnatal subventricular zone (SVZ) neural stem cells (NSCs) [NimbleGen] |
GSE22476 |
Dnmt3a-dependent non-promoter DNA methylation facilitates transcription of neurogenic genes |
GSE24420 |
Chip-chip from mouse olfactory epithelium (OE) and liver with antibodies against H3K9me3 and H4K20me3 |
GSE26827 |
Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells (ChIP-chip and MeDIP-chip) |
GSE26833 |
Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells |
GSE27613 |
Genome-wide analysis of 5-hydroxymethylcytosine distribution reveals its dual function in transcriptional regulation in mouse embryonic stem cells |
GSE28291 |
Genome-scale epigenetic reprogramming during epithelial to mesenchymal transition |
GSE28581 |
Epigenomic reprogramming during epithelial to mesenchymal transition |
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Data table header descriptions |
ID |
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Chromosome |
Chromosome number for each probe |
RANGE_GB |
NCBI Build 36.1 RefSeq Assembly |
SPOT_ID |
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RANGE_START |
Position for each probe |
SEQUENCE |
Sequence for each probe. |
Data table |
ID |
Chromosome |
RANGE_GB |
SPOT_ID |
RANGE_START |
SEQUENCE |
CHR04FS119314194 |
chr4 |
NC_000070.4 |
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119314194 |
ACAGAGCTCTTAATATAGAGACCGAGATCATGTTCCTTATCTGTTCCTCCTG |
CHR04FS119314359 |
chr4 |
NC_000070.4 |
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119314359 |
ATGGGAGCGTTGTTGCTTTAAAGGCTAACTGCTACTGTGCGCTCTGTAGA |
CHR04FS119314564 |
chr4 |
NC_000070.4 |
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119314564 |
GGAGATACATTTAGTCTGAAGTCCTGGCAGATTCCAAGATTCAACTTGATGGAAGATAACAT |
CHR04FS119314755 |
chr4 |
NC_000070.4 |
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119314755 |
CGGTTTCCAGTCTACTACCCAGGGCACATTTTACCACTCCCTAACTGTAC |
CHR04FS119314945 |
chr4 |
NC_000070.4 |
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119314945 |
TGTAGGTGCCACCCAGTCTGGACTGCACAGCCGTGAGGTGTAAAGCAGAG |
CHR04FS119315193 |
chr4 |
NC_000070.4 |
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119315193 |
AAATATAATAAAGCTAGAAACAAGAGAAACTGAAAAATTATGTCTAAAGGCTATA |
CHR04FS119315362 |
chr4 |
NC_000070.4 |
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119315362 |
GTTTTTGTGCCCTGTTTAAGAAGGCAGATGGATCAGGAGCACAAACCAAAT |
CHR04FS119315553 |
chr4 |
NC_000070.4 |
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119315553 |
CCTGCTGGGAACTTGGTGATCTTTGGTTGGCATTTAATAGGACTATACTATATATTAT |
CHR04FS119317265 |
chr4 |
NC_000070.4 |
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119317265 |
CTCCTGTAGGCCAATTTCAGATTAACAAAGTAACTGTTATGGTCTGTTTTGAAGCTG |
CHR04FS119317470 |
chr4 |
NC_000070.4 |
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119317470 |
TGACATTATGCTACAGTTGAAAGAGGGCTGATGGTGGACTTGGGTAGAAG |
CHR04FS119317655 |
chr4 |
NC_000070.4 |
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119317655 |
AATTCAGACATTGTGCTCAGAACTGGAAGGATGTCTGACTTATGTGAGCACA |
CHR04FS119317880 |
chr4 |
NC_000070.4 |
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119317880 |
ACAGCAGTGCTTAAGGTCTGAATGCATACATTCATTGTCAGATCCCATCTCT |
CHR04FS119318050 |
chr4 |
NC_000070.4 |
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119318050 |
TGAAATCCCAAGGTGGTGGGAAGGCAGAGTACGGGAGTTGGTGATGTGAA |
CHR04FS119318245 |
chr4 |
NC_000070.4 |
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119318245 |
AAGTGTTCCTGAATGCCAACTGGAGTTTGAGGCATGAGCCAAGACTCAAA |
CHR04FS119318466 |
chr4 |
NC_000070.4 |
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119318466 |
ATGAAAGCACTATTACAAATGATGTGTGAGGGGCTCGTTAGGCAAAGTGTTTG |
CHR04FS119318880 |
chr4 |
NC_000070.4 |
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119318880 |
TTCAGTTATTGACTGCATTTCCAGGCCATGAGGTGGTGAAGCTAATGAGT |
CHR04FS119319061 |
chr4 |
NC_000070.4 |
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119319061 |
AAAAGATAGCATAGACTCTTCACTTCCTCTGGCTGTGGCTGCAGCTCAGA |
CHR04FS119319271 |
chr4 |
NC_000070.4 |
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119319271 |
CAAAGTTCACATTTGGTTTCAGATAAAAAGACAAATTGGCATGGGCATGGCTCTTAGG |
CHR04FS119319451 |
chr4 |
NC_000070.4 |
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119319451 |
AGACTTAATACAGTATTAGCGACTTCCTGACTCAACAGACCTTGGTGAGGT |
CHR04FS119319691 |
chr4 |
NC_000070.4 |
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119319691 |
ATTCCACTCTCTGCTCAGTGGGCATCCTTGCAAGGGTGTCTCTGACATGA |
Total number of rows: 2161350
Table truncated, full table size 209873 Kbytes.
Supplementary file |
Size |
Download |
File type/resource |
GPL7524_2007-08-17_MM8_Economy_02_HX1.ndf.gz |
134.8 Mb |
(ftp)(http) |
NDF |
GPL7524_2007-08-17_MM8_Economy_02_HX1.pos.gz |
24.3 Mb |
(ftp)(http) |
POS |
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