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Platform GPL7523 Query DataSets for GPL7523
Status Public on Nov 05, 2008
Title NimbleGen mouse (mm8) whole genome tiling array 1 of 4 [2007-08-17_MM8_Economy_01]
Technology type in situ oligonucleotide
Distribution commercial
Organism Mus musculus
Manufacturer Nimblegen Systems Inc.
Manufacture protocol Mouse whole genome tiling arrays
 
 
Submission date Oct 24, 2008
Last update date Jun 05, 2012
Organization NimbleGen Systems, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov
Phone 608-218-7600
URL http://www.nimblegen.com/
Street address 504 S. Rosa Road
City Madison
State/province WI
ZIP/Postal code 53719
Country USA
 
Samples (17) GSM336512, GSM336513, GSM558452, GSM558456, GSM558460, GSM558464 
Series (7)
GSE13445 Large organized chromatin K9-modifications (LOCKs) distinguish differentiated from embryonic stem cells
GSE22475 Genome-wide location analysis of Dnmt3a-mediated epigenetic regulation in murine postnatal subventricular zone (SVZ) neural stem cells (NSCs) [NimbleGen]
GSE22476 Dnmt3a-dependent non-promoter DNA methylation facilitates transcription of neurogenic genes

Data table header descriptions
ID
Chromosome Chromosome number for each probe
RANGE_GB NCBI Build 36.1 RefSeq Assembly
SPOT_ID
RANGE_START Position for each probe
SEQUENCE Sequence for each probe.

Data table
ID Chromosome RANGE_GB SPOT_ID RANGE_START SEQUENCE
CHR01FS003000168 chr1 NC_000067.4 3000168 TAATCTATTTTGCAGATGTAATTGTATGTATTATAATTGTAATAGTATATACTTGTATGTAC
CHR01FS003000802 chr1 NC_000067.4 3000802 TCTGGATTTTTGATGGCTATCATGACCTCTGAATGACTAGGGAATCTTGGAC
CHR01FS003001017 chr1 NC_000067.4 3001017 CAGTGGGATAGGTGGTGAGATAGGTGGGGAGGTGCTAGAATGGGTCTTTG
CHR01FS003001227 chr1 NC_000067.4 3001227 TAGGCATTCTTAATGTTTTTATTTTCCCATCTCCTCCCTAATTAGAGTCATTCTGG
CHR01FS003001587 chr1 NC_000067.4 3001587 GCCTTTAAAAACAACTTGTCACAGGCATTCCAATGGACAGTAATCGTATCAATTTTA
CHR01FS003002622 chr1 NC_000067.4 3002622 TTTCTAGTTTGTTGCTGTTTGAATTAAGACTGTGTTTAACATGCTTGTATATGACACTTG
CHR01FS003002827 chr1 NC_000067.4 3002827 GCCTGAGTGTGACAATGACTGAGGTGACATTCTACTTACTAGTTCTAAAAACAGTCA
CHR01FS003003042 chr1 NC_000067.4 3003042 TTAGTTCATTAATGTAAAATTGTCATTTTTTTCAACCTCAAATTTCTTGCTTGT
CHR01FS003003257 chr1 NC_000067.4 3003257 AAAAATATTTTTTGTGTGTGTACAGGAGCTTTGTCTGATTGTATGCTTGTGTGCCTGGTG
CHR01FS003003467 chr1 NC_000067.4 3003467 TTCTATAGCTATGCAAAATATCTAGAAATGCCTCTTTAACTATTTCTTTTGCTCAGGATTA
CHR01FS003003651 chr1 NC_000067.4 3003651 TCATATTCACGACATTATTTCTACTATTCTATGAGCATCTTAGTGTCTTCCTATCAGGATTTTCA
CHR01FS003003876 chr1 NC_000067.4 3003876 GAAATGACCAAACATCTTAAGTTAGAATCTATGTAGTGTTATGCAAATATGCATAAATTTC
CHR01FS003004137 chr1 NC_000067.4 3004137 GTACTTGCATGTTTTGTAAAATAAATAATTCAAAATTTATACATTTTGAAAAT
CHR01FS003004202 chr1 NC_000067.4 3004202 CTATTTCACTACTGATTATAAACTTATTTAATCAAACTCTCATTAAATAAAAACA
CHR01FS003004447 chr1 NC_000067.4 3004447 CCTTTATTTCTTGACATTATGACTCCTCTCAAGTTTATCTAATGAATTTCAAATGTCAA
CHR01FS003011106 chr1 NC_000067.4 3011106 CGTGATCTTAAAACCACTAACCAGACAGCTCCATGCTCCTCAAAGAAGAC
CHR01FS003017523 chr1 NC_000067.4 3017523 TTGTTTTGCTTTATCCTAGGCCAGTGCTGGGTAAAGTGACTCAGGTTGGT
CHR01FS003017712 chr1 NC_000067.4 3017712 CCTCAAGGCTGTAACCATAGGACCGGGAAACTCAGTGTCTCAAAGATGTT
CHR01FS003017947 chr1 NC_000067.4 3017947 TTTTACAACACAGTTTTGTTATTGACACTTCACTCTAACATCAGAAGTGATTGCAAGAAA
CHR01FS003018122 chr1 NC_000067.4 3018122 CACTGCATGATACAACTATGTGGTTAAAGGCAAGAGTTTGAACTTCTCTAAGTTCTATGT

Total number of rows: 2161350

Table truncated, full table size 211310 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL7523_2007-08-17_MM8_Economy_01.ndf.gz 45.3 Mb (ftp)(http) NDF
GPL7523_2007-08-17_MM8_Economy_01.pos.gz 8.1 Mb (ftp)(http) POS

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