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Platform GPL7017 Query DataSets for GPL7017
Status Public on Jul 04, 2008
Title ENS SGDB Mus musculus 22k Compugen
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Mus musculus
Manufacturer ENS Biology Department Transcriptome Platform
Manufacture protocol Slide spotted using a MicroGrid II (Genomic Solution)
Spotting conditions: Temperature of 20¡C more or less 5¡C. Hygroscopy of 50% more or less 5%.
Before each spotting:
1. Printing tips (Geneworx 10k) are tested on glass slides.
2. The spotting robot is put in operation and water tanks filled with distilled water.
3. Corning glass slides are deposited on plates.
4. The spotting program specific for each slide bacth is launched.
Support Glass slide
Coating Amino silane (Corning UltraGAPS)
 
Description Mouse OligoLibraryTM. The Mouse OligoLibraryTM by Compugen and Sigma-Genosys combines Compugen's superior computational platform and oligo design tools with Sigma's high-quality oligo synthesis.
Oligo length: 65 bases.
Modification: 5Õ-C6 amino modifier.
Number of oligos: 21,997.
Number of genes: 21,587 (excluding controls).
Positive controls: four oligos per plate from glyceraldehyde-3-phosphate dehydrogenase (GAPDH).
Distance from the 3Õ end: 95% of the oligos are within the range of 65Ð1,072 bases from the 3Õ end. Average distance from the 3Õ end is 379 bases.
Cross-homology: 90% of the oligos contain a predicted cross-homology of less than 81.5%. Average cross-homology is 37.7%.
Longest full match stretch: in addition to cross-homology percentage, oligos are also selected with a minimal length of sequence identity in the cross-homology alignment.
GC content: 95% of the oligos contain a GC content within the range of 40%Ð60%. Average GC content is 49.9%.
 
Web link http://transcriptome.ens.fr/
Contributor(s) Le Crom S, Topilko P, Tanty V, Blugeon C
Submission date Jul 03, 2008
Last update date Jul 04, 2008
Contact name Stéphane LE CROM
Organization name École normale supérieure
Department Biology Institute - IBENS
Lab Genomic platform
Street address 46 rue d'Ulm
City Paris
ZIP/Postal code 75013
Country France
 
Samples (14) GSM303287, GSM303288, GSM303289, GSM303290, GSM303291, GSM303292 
Series (2)
GSE11979 Characterization of boundary cap cells using novel markers obtained by RNA profiling
GSE17366 New schwann cell markers identified by gene profiling analysis after axonal contact

Data table header descriptions
ID Spot identifier
probe_id Source oligo name
probe_name Probe identifier (include the Compugen serial number)
GB_ACC GenBank Accession number of the oligo target gene
unigene Unigene identifier
description complete description of the oligo target gene
gene_ontology Gene Ontology category related to the oligo target gene
SPOT_ID

Data table
ID probe_id probe_name GB_ACC unigene description gene_ontology SPOT_ID
87547 23437 CGEN_MOUSE_3000002_1 X57277 Mm.889 M.musculus rac1 gene. inflammatory response [0006954]
83835 23571 CGEN_MOUSE_3000003_1 NM_008954 Mm.86487 Mus musculus persephin (Pspn), mRNA. cell growth and/or maintenance [0008151]
80123 23573 CGEN_MOUSE_3000004_1 NM_021532 Mm.46662 Mus musculus thymus expressed gene 3 (Thyex3-pending), mRNA. cell growth and/or maintenance [0008151]
76411 23575 CGEN_MOUSE_3000005_1 NM_008726 Mm.2740 Mus musculus natriuretic peptide precursor type B (Nppb), mRNA. cell growth and/or maintenance [0008151]
72699 23577 CGEN_MOUSE_3000006_1 AJ278128 Mm.28542 Mus musculus mRNA for hypothetical protein (ORF1), clone Telethon(Italy_B41)_Strait02603_FL101. cell growth and/or maintenance [0008151]
91344 23579 CGEN_MOUSE_3000007_1 AF194972 Mus musculus developmental control protein mRNA, partial cds. regulation of transcription, DNA-dependent [0006355]
87632 23581 CGEN_MOUSE_3000008_1 NM_008841 Mm.12945 Mus musculus phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 2 (p85 beta) (Pik3r2), mRNA. cell growth and/or maintenance [0008151]
83920 23583 CGEN_MOUSE_3000009_1 NM_008385 Mm.25777 Mus musculus inositol polyphosphate-5-phosphatase, 75 kDa (Inpp5b), mRNA. cell growth and/or maintenance [0008151]
80208 23585 CGEN_MOUSE_3000010_1 X96606 Mm.3782 M.musculus mRNA for Ott protein, clone ak27. cell growth and/or maintenance [0008151]
76496 23587 CGEN_MOUSE_3000011_1 NM_008860 Mm.28561 Mus musculus protein kinase C, zeta (Prkcz), mRNA. protein amino acid phosphorylation [0006468]
72784 23589 CGEN_MOUSE_3000012_1 NM_019564 Mm.30156 Mus musculus protease, serine, 11 (Igf binding) (Prss11), mRNA. regulation of cell growth [0001558]
92187 23613 CGEN_MOUSE_3000013_1 AF016695 Mus musculus colonic mucin (MUC2) mRNA, partial cds. cell growth and/or maintenance [0008151]
88475 23615 CGEN_MOUSE_3000014_1 AF159256 Mm.7521 Mus musculus Lps/Ran GTPase (lps(d)) mRNA, complete cds. intracellular protein transport [0006886]
84763 23617 CGEN_MOUSE_3000015_1 NM_007424 Mm.2759 Mus musculus aggrecan 1 (Agc1), mRNA. cell growth and/or maintenance [0008151]
81051 23619 CGEN_MOUSE_3000016_1 NM_009060 Mm.2118 Mus musculus regucalcin (Rgn), mRNA. cell growth and/or maintenance [0008151]
77339 23621 CGEN_MOUSE_3000017_1 AJ010752 Mus musculus mRNA for gastric mucin-like protein, partial. cell growth and/or maintenance [0008151]
73627 23623 CGEN_MOUSE_3000018_1 NM_008045 Mm.46711 Mus musculus follicle stimulating hormone beta (Fshb), mRNA. oogenesis [0007292]
92272 23625 CGEN_MOUSE_3000019_1 NM_009639 Mm.14138 Mus musculus acidic epididymal glycoprotein 2 (Aeg2), mRNA. cell growth and/or maintenance [0008151]
88560 23627 CGEN_MOUSE_3000020_1 AJ242721 Mm.133404 Mus musculus mRNA for partial AIP37 protein. cell growth and/or maintenance [0008151]
84848 23629 CGEN_MOUSE_3000021_1 X57199 Mm.45570 Mouse mRNA for lysosomal acid phosphatase. cell growth and/or maintenance [0008151]

Total number of rows: 22272

Table truncated, full table size 4009 Kbytes.




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