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Platform GPL6879 Query DataSets for GPL6879
Status Public on Dec 01, 2008
Title Affymetrix GeneChip Human Genome U133 Plus 2.0 Array [HGU133Plus2_Hs_ENSG (v11.0.1) CDF]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site
 
Description This is identical to GPL570 but a custom CDF environment was used to extract data. The custom chip definition files (CDF) was based on Ensembl gene annotation from build 42 rather than Affymetrix annotation (Dai et al., PMID: 16284200).
 
Submission date May 20, 2008
Last update date Feb 04, 2010
Contact name Mehmet Somel
E-mail(s) somel@eva.mpg.de
Phone +49-(0)341-3550-530
Fax +49-(0)341-3550-555
Organization name Max Planck Institute for Evolutionary Anthropology
Department Evolutionary Genetics
Street address Deutscher Platz 6
City Leipzig
ZIP/Postal code D-04103
Country Germany
 
Samples (114) GSM289913, GSM289914, GSM289915, GSM289916, GSM289917, GSM289918 
Series (3)
GSE11512 Gene expression changes during primate postnatal brain development
GSE20940 Lactobacillus rhamnosus LGG and LC705 effects on human primary macrophages
GSE26545 MicroRNA expression and regulation in human, chimpanzee, and macaque brain
Relations
Alternative to GPL570

Data table header descriptions
ID
SPOT_ID Gene identifier

Data table
ID SPOT_ID
ENSG00000000003_at ENSG00000000003
ENSG00000000005_at ENSG00000000005
ENSG00000000419_at ENSG00000000419
ENSG00000000457_at ENSG00000000457
ENSG00000000460_at ENSG00000000460
ENSG00000000938_at ENSG00000000938
ENSG00000000971_at ENSG00000000971
ENSG00000001036_at ENSG00000001036
ENSG00000001084_at ENSG00000001084
ENSG00000001167_at ENSG00000001167
ENSG00000001460_at ENSG00000001460
ENSG00000001461_at ENSG00000001461
ENSG00000001497_at ENSG00000001497
ENSG00000001561_at ENSG00000001561
ENSG00000001617_at ENSG00000001617
ENSG00000001626_at ENSG00000001626
ENSG00000001629_at ENSG00000001629
ENSG00000001630_at ENSG00000001630
ENSG00000001631_at ENSG00000001631
ENSG00000002016_at ENSG00000002016

Total number of rows: 17429

Table truncated, full table size 595 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL6879_HGU133Plus2_Hs_ENSG.cdf.gz 7.3 Mb (ftp)(http) CDF
GPL6879_HGU133Plus2_Hs_ENSG_desc.txt.gz 48.9 Kb (ftp)(http) TXT
GPL6879_HGU133Plus2_Hs_ENSG_mapping.txt.gz 2.3 Mb (ftp)(http) TXT
GPL6879_HGU133Plus2_Hs_ENSG_probe_tab.txt.gz 3.8 Mb (ftp)(http) TXT

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