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Platform GPL6791 Query DataSets for GPL6791
Status Public on Apr 29, 2008
Title Affymetrix GeneChip Human Genome U133 Plus 2.0 Array [CDF: Hs_ENTREZG_10]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol This array is identical to GPL570 but a custom, remapped CDF environment is used to extract data. This is version 10 of the remapped CDF. The CDF for various platforms can be found at the link below.
 
Description CDF file was created by Microarray Lab at the Molecular and Behavioral Neuroscience Institute at the University of Michigan.
Oligonucleotide probes on GeneChips were reorganized based on the latest genome and transcriptome information. In this particular case the Entrez Gene database (build: Sept 11, 2006) was used as source.
For the CDF file based on Entrez Gene:
A probe must hit only one genomic location;
Probes that can be mapped to the same target sequence in the correct direction are grouped together in the same probe set;
Each probe set must contain at least three oligonucleotide probes and probes in a set are ordered according to their location in the corresponding exon.
For detailed description please see the paper and website.
 
Web link http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/CDF_download.asp
Citation(s) 16284200
Submission date Apr 28, 2008
Last update date Mar 14, 2013
Contact name Guido Hooiveld
E-mail(s) guido.hooiveld@wur.nl
Organization name Wageningen University
Department Div. Human Nutrition & Health
Lab Nutrition, Metabolism & Genomics Group
Street address HELIX, Stippeneng 4
City Wageningen
ZIP/Postal code NL-6708WE
Country Netherlands
 
Samples (76) GSM284955, GSM284956, GSM284957, GSM284958, GSM284959, GSM284960 
Series (7)
GSE11289 Activation of peroxisome proliferator-activated receptor alpha in human peripheral blood mononuclear cells
GSE18741 Mucosal responses of healthy humans to three different probiotic Lactobacillus bacteria
GSE24152 Comparative Gene Expression Profiling Analysis of Urothelial Carcinoma of Renal Pelvis and Bladder
Relations
Alternative to GPL570

Data table header descriptions
ID
EntrezGeneID EntrezGene ID
Gene_Symbol Gene Symbol
Description Gene Name
SPOT_ID Control Probe

Data table
ID EntrezGeneID Gene_Symbol Description SPOT_ID
10000_at 10000 AKT3 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)
10001_at 10001 MED6 mediator complex subunit 6
10002_at 10002 NR2E3 nuclear receptor subfamily 2, group E, member 3
10003_at 10003 NAALAD2 N-acetylated alpha-linked acidic dipeptidase 2
10004_at 10004 NAALADL1 N-acetylated alpha-linked acidic dipeptidase-like 1
10005_at 10005 ACOT8 acyl-CoA thioesterase 8
10006_at 10006 ABI1 abl-interactor 1
10007_at 10007 GNPDA1 glucosamine-6-phosphate deaminase 1
10008_at 10008 KCNE3 potassium voltage-gated channel, Isk-related family, member 3
10009_at 10009 ZBTB33 zinc finger and BTB domain containing 33
1000_at 1000 CDH2 cadherin 2, type 1, N-cadherin (neuronal)
10010_at 10010 TANK TRAF family member-associated NFKB activator
10011_at 10011 SRA1 steroid receptor RNA activator 1
10013_at 10013 HDAC6 histone deacetylase 6
10014_at 10014 HDAC5 histone deacetylase 5
10015_at 10015 PDCD6IP programmed cell death 6 interacting protein
10016_at 10016 PDCD6 programmed cell death 6
10017_at 10017 BCL2L10 BCL2-like 10 (apoptosis facilitator)
10018_at 10018 BCL2L11 BCL2-like 11 (apoptosis facilitator)
10019_at 10019 SH2B3 SH2B adaptor protein 3

Total number of rows: 17589

Table truncated, full table size 1023 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided
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