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Platform GPL6189 Query DataSets for GPL6189
Status Public on Dec 01, 2007
Title Agilent 244k ENCODE custom tiling array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent
Manufacture protocol see the manufacturer's website
Catalog number 25150451
 
Description Human genome build 35
 
Submission date Nov 29, 2007
Last update date Dec 01, 2007
Contact name David Scott Johnson
E-mail(s) seasquirtdoctor@gmail.com
Phone 650-725-3018
Organization name Stanford University
Department Genetics
Lab Richard M. Myers
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Samples (3) GSM245949, GSM245950, GSM245951
Series (2)
GSE9732 Spike-in Experiment for ChIP-chip Simulation
GSE10114 Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets

Data table header descriptions
ID
Row
Col
SEQUENCE Nucleotide sequence of each probe
GeneName
ProbeName
RANGE_GB GenBank accession range
RANGE_START Indicates the start position of the probe relative to the RANGE_GB accession
RANGE_END Indicates the end position of the probe relative to the RANGE_GB accession

Data table
ID Row Col SEQUENCE GeneName ProbeName RANGE_GB RANGE_START RANGE_END
1 1 1 AACAAACAAGTTAAGGGCAAGATTCTTGCCAAGAGAATTAATGTGCGTATTGAGCACATT HsCGHBrightCorner HsCGHBrightCorner
2 1 2 GCTAGCGAAAGCTAGCTTTTCGATCGGAAACGATCGTTTTCCAGTGACGAAAGTCACTGG DarkCorner DarkCorner
3 1 3 GCTAGCGAAAGCTAGCTTTTCGATCGGAAACGATCGTTTTCCAGTGACGAAAGTCACTGG DarkCorner DarkCorner
4 1 4 GTAAGGGAGTTTCCCCCGGAACTTAGATTGTCACATCTAAGCTGTGATAACCGACGCCTA chr21:033302069-033302114 Enc_00_P03177806 NC_000021.7 033302069 033302114
5 1 5 ACATGAAACTACTGATGTTTCAAGTAAAATAAAAATGAATGTCTTCATAGCACTGTTTGT chr7:126069210-126069269 Enc_00_P02061748 NC_000007.11 126069210 126069269
6 1 6 GGTCAGAATATGATCTTGAACATATATTTTTAAATTTTCATGGGTTCAACTCTTCACCTG chr13:029672122-029672181 Enc_00_P02610636 NC_000013.9 029672122 029672181
7 1 7 ACTTCCATACAAAGGTGTTCAGGTAGCAGCGACATCTTTATCTGTCCTCACTTAATAACC chr16:026200487-026200540 Enc_00_P02881135 NC_000016.8 026200487 026200540
8 1 8 ACAATGTATATACTGAGTAGTCAGAGAAAAGACAGCAAAAAGAGACGATGAAGCAAGTGA chr11:005113925-005113984 Enc_00_P02351217 NC_000011.8 005113925 005113984
9 1 9 CTCAAGGGAAAAGGAACATCTAAGAAGTACTGGAGAGAGAAGAGTCCGAAAAATAGATAA chr16:000078424-000078479 Enc_00_P02819947 NC_000016.8 000078424 000078479
10 1 10 CAGTTTCTCCGGGATTAAGCGAGAGTCGCGGCGGAAAAGGCCCAGATAACCGACGCCTAA chr11:064302999-064303043 Enc_00_P02438353 NC_000011.8 064302999 064303043
11 1 11 GATCTAATAAGTAGTTTGTTGTTATTTTAGCTGATTGGACTGTGAGAAGACAAAGTGCTG chr21:039691726-039691785 Enc_00_P03302490 NC_000021.7 039691726 039691785
12 1 12 TTAAAAGGCAACTTAAGTTGCTAATGTGTTCAAAAGTTAGATCAGACTCCCAAAACTGCC chr6:073812539-073812598 Enc_00_P01449367 NC_000006.9 073812539 073812598
13 1 13 CCCATCCCATCAATATCAACAGATGTATTCATCTCCAATTTTATGGAAAAAATTGAGGCC chr7:089755480-089755539 Enc_00_P01642798 NC_000007.11 089755480 089755539
14 1 14 ATGGCCAACGGAGTGATCCCGCCGCCCGGGGGCGCCTCCCCCCTAATAACCGACGCCTAA chr2:220318220-220318264 Enc_00_P01133786 NC_000002.9 220318220 220318264
15 1 15 CCAGAGAACACCAACATTACCAAAGCTTGAAAGATAGTTTCTAAATAACATTCACATTTA chr10:055313421-055313480 Enc_00_P02233432 NC_000010.8 055313421 055313480
16 1 16 TTCCTGTGCCTACTTTTTAGGATTTTTCATAATCTAGTGTTAGTCTGCCTATCCAGCATT chr1:148467320-148467379 Enc_00_P01034007 NC_000001.8 148467320 148467379
17 1 17 CTATGCCAAAGTTATAAGCAAAGCTCGCACCAGAGAAAGTTCCGATTTTTCATGAAATAA chr21:039374582-039374637 Enc_00_P03277064 NC_000021.7 039374582 039374637
18 1 18 CTAAGCAGGTAAAAGGACCCATCAGCAGTAGCCATAAGAAGATCCCAAAATCTATAACCG chr5:132126594-132126646 Enc_00_P01349091 NC_000005.8 132126594 132126646
19 1 19 AGGGGATATGGAGAGGTACTGGTGAAATGTAAATGCACAGGAACCAACATAACCGACGCC chr20:033633816-033633863 Enc_00_P03109994 NC_000020.9 033633816 033633863
20 1 20 AAATCTGTTGCAGCTTTCTAATTGCATAGTGAAGACCACTCTCTTTTCTTCCAATTCCAA chr2:234753476-234753535 Enc_00_P01196327 NC_000002.9 234753476 234753535

Total number of rows: 243504

Table truncated, full table size 35342 Kbytes.




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